Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0029
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    29   4.5  
SB_4258| Best HMM Match : Herpes_US9 (HMM E-Value=6.3)                 29   4.5  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                28   7.9  

>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 272 EISQEQRTDTEKSIADTDSSSLSHYVDLPKSPLADSPKPTEELLEKPVEDTGSV 433
           ++ + +  D+   +   D S L H V   K+PL       EEL+ K   D   V
Sbjct: 554 DVIEAEAIDSRAEVKSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEV 607



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 266 SIEISQEQRTDTEKSIADTDSSSLSHYVDLPKSPLADSPKPTEELLEKPVEDTGSV 433
           S E  +E+  D+   +   D S L H   + K+PL  +    EE+  + + D  +V
Sbjct: 628 SQEDIKEEAVDSRAEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAV 683


>SB_4258| Best HMM Match : Herpes_US9 (HMM E-Value=6.3)
          Length = 229

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 278 SQEQRTDTEKSIADTDSSSLSHYVDLPKSPLADSP 382
           SQ +R +  K+     S S+SH  D P+ P  D P
Sbjct: 70  SQSERLERNKAALKIRSLSMSHAYDHPRKPAYDRP 104


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 147 ICSFVMCSVVTFTSVGKTASISFL---TTSEFLESNSCTVRSSCTFGLTSV 4
           +CS + C   T+TS   T+S S++   TT     +NSCT     T G +++
Sbjct: 62  VCSIISC---TYTSNSATSSGSYIISSTTIGVCPTNSCTNLKDSTSGSSTI 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,562
Number of Sequences: 59808
Number of extensions: 227095
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)