Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0028
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33206| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.0014)         30   1.5  
SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             28   6.2  
SB_5416| Best HMM Match : Peptidase_S9 (HMM E-Value=3.8e-24)           28   6.2  
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  28   8.1  

>SB_33206| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.0014)
          Length = 203

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 478 CLGKASPPKPVL*DMQQVVGPPCESPTHAMTFNMAVTRREFFAHE 612
           CL + SP        Q  V  PC+ P  AMTF+  +TR +    E
Sbjct: 126 CLDRGSPSD------QYAVMNPCDGPLRAMTFDAPMTRTQILTRE 164


>SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 536 PTTCCMSHRTGFGGEALPRQV 474
           PT  C SHRTG   ++ PRQ+
Sbjct: 274 PTDICRSHRTGKKKDSKPRQI 294


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 7   PAYSCREAVMRFSLKGGTAVVTILETLELISQGRWRIYVVDVY 135
           P+Y     +  +   GGT  +T + TLE+I +   R +V D Y
Sbjct: 109 PSYLLGHPIEDYDASGGTVYITAIYTLEMICKIISRGFVKDSY 151


>SB_5416| Best HMM Match : Peptidase_S9 (HMM E-Value=3.8e-24)
          Length = 637

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 315 SQNEQLAWAEWNSSNLYQKHDSTWKGKI 232
           S++  LAW +WN  N+       W GK+
Sbjct: 189 SKHGMLAWVQWNHPNMPWDDTELWIGKL 216


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +1

Query: 118 YVVDVYGLQ*PVNTRWAVSSSNHIRKKKKLTYKISI 225
           Y++D + +  P+N ++AVSSS    +++ L+Y +S+
Sbjct: 652 YILD-FSVSYPLNAKFAVSSSAFTIRERLLSYVVSV 686


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,216,473
Number of Sequences: 59808
Number of extensions: 437049
Number of successful extensions: 945
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)