Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0128
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6295| Best HMM Match : WSC (HMM E-Value=3.8e-10)                    32   0.42 
SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)              28   6.8  

>SB_6295| Best HMM Match : WSC (HMM E-Value=3.8e-10)
          Length = 281

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 673 ADDALSEGCQGKSSIRCGQNLLVSDY 596
           AD + S GCQG S+++CG +++ S Y
Sbjct: 86  ADSSCSYGCQGNSNLKCGGSMINSVY 111


>SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)
          Length = 1156

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 243 SPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKKSD 130
           SPG  N L++T  +  G K AS   +   D  ++KK D
Sbjct: 475 SPGRKNILIVTRKTSSGEKPASATEKNGKDVGREKKMD 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,674,839
Number of Sequences: 59808
Number of extensions: 451798
Number of successful extensions: 1082
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)