Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0114
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 179 2e-45
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 179 2e-45
SB_56| Best HMM Match : Actin (HMM E-Value=0) 179 2e-45
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 179 2e-45
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 178 3e-45
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 1e-44
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 158 5e-39
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 59 4e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 56 3e-08
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_54| Best HMM Match : Actin (HMM E-Value=0) 46 3e-05
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_7894| Best HMM Match : Pox_A14 (HMM E-Value=0.13) 31 0.70
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 179 bits (435), Expect = 2e-45
Identities = 98/145 (67%), Positives = 109/145 (75%), Gaps = 4/145 (2%)
Frame = -3
Query: 684 ESSYELPRRVRSSLWETKRFRCPKGFSSQPFVLGYGSLR-HPRDHI*LHH---EVRRGHP 517
E SYELP ++ +RFRCP+ QP LG S H + + ++R+
Sbjct: 200 EKSYELPDGQVITIGN-ERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKD-- 255
Query: 516 *GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 337
LYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLS
Sbjct: 256 --LYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLS 313
Query: 336 TFQQMWISKQEYDESGPSIVHRKCF 262
TFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 314 TFQQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 179 bits (435), Expect = 2e-45
Identities = 98/145 (67%), Positives = 109/145 (75%), Gaps = 4/145 (2%)
Frame = -3
Query: 684 ESSYELPRRVRSSLWETKRFRCPKGFSSQPFVLGYGSLR-HPRDHI*LHH---EVRRGHP 517
E SYELP ++ +RFRCP+ QP LG S H + + ++R+
Sbjct: 238 EKSYELPDGQVITIGN-ERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKD-- 293
Query: 516 *GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 337
LYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLS
Sbjct: 294 --LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLS 351
Query: 336 TFQQMWISKQEYDESGPSIVHRKCF 262
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 179 bits (435), Expect = 2e-45
Identities = 98/145 (67%), Positives = 109/145 (75%), Gaps = 4/145 (2%)
Frame = -3
Query: 684 ESSYELPRRVRSSLWETKRFRCPKGFSSQPFVLGYGSLR-HPRDHI*LHH---EVRRGHP 517
E SYELP ++ +RFRCP+ QP LG S H + + ++R+
Sbjct: 237 EKSYELPDGQVITIGN-ERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKD-- 292
Query: 516 *GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 337
LYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLS
Sbjct: 293 --LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLS 350
Query: 336 TFQQMWISKQEYDESGPSIVHRKCF 262
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 TFQQMWISKQEYDESGPSIVHRKCF 375
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 179 bits (435), Expect = 2e-45
Identities = 97/145 (66%), Positives = 110/145 (75%), Gaps = 4/145 (2%)
Frame = -3
Query: 684 ESSYELPRRVRSSLWETKRFRCPKGFSSQPFVLGYGSLR-HPRDHI*LHH---EVRRGHP 517
E SYELP ++ +RFRCP+ QP LG S H + + ++R+
Sbjct: 211 EKSYELPDGQVITIGN-ERFRCPEALL-QPSFLGMESSGIHETTYNSIMKCDVDIRKD-- 266
Query: 516 *GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 337
LYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLS
Sbjct: 267 --LYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLS 324
Query: 336 TFQQMWISKQEYDESGPSIVHRKCF 262
TFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 325 TFQQMWISKQEYDESGPAIVHRKCF 349
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 178 bits (434), Expect = 3e-45
Identities = 98/145 (67%), Positives = 109/145 (75%), Gaps = 4/145 (2%)
Frame = -3
Query: 684 ESSYELPRRVRSSLWETKRFRCPKGFSSQPFVLGYGSLR-HPRDHI*LHH---EVRRGHP 517
E SYELP ++ +RFRCP+ QP LG S H + + ++R+
Sbjct: 238 EKSYELPDGQVITIGN-ERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKD-- 293
Query: 516 *GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 337
LYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLS
Sbjct: 294 --LYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLS 351
Query: 336 TFQQMWISKQEYDESGPSIVHRKCF 262
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 352 TFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 177 bits (430), Expect = 1e-44
Identities = 97/145 (66%), Positives = 109/145 (75%), Gaps = 4/145 (2%)
Frame = -3
Query: 684 ESSYELPRRVRSSLWETKRFRCPKGFSSQPFVLGYGSLR-HPRDHI*LHH---EVRRGHP 517
E SYELP ++ +RFRCP+ QP LG S H + + ++R+
Sbjct: 237 EKSYELPDGQVITIGN-ERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKD-- 292
Query: 516 *GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 337
LYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLS
Sbjct: 293 --LYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLS 350
Query: 336 TFQQMWISKQEYDESGPSIVHRKCF 262
TFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 TFQQMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 158 bits (383), Expect = 5e-39
Identities = 85/148 (57%), Positives = 105/148 (70%), Gaps = 3/148 (2%)
Frame = -3
Query: 696 APPRESSYELPRRVRSSLWETKRFRCPKGFSSQPFVLGYGSLRHPRDHI*LHHEVRRGHP 517
+P E +YELP S+ +RFRCP+ QP LG + P H +++ + +
Sbjct: 7 SPILEKTYELPDGQVISIGN-ERFRCPEAMF-QPAFLG---MEAPGIHEAIYNCIMKCDV 61
Query: 516 *---GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 346
LY+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILA
Sbjct: 62 DIRKDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILA 121
Query: 345 SLSTFQQMWISKQEYDESGPSIVHRKCF 262
SLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 122 SLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 16/99 (16%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 379
LY N VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 378 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 262
Y+VW GGS+LAS F + +K +YDE GPSI F
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/61 (37%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Frame = -3
Query: 513 GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII---APPERKYSVWIGGSILAS 343
GL+ + +++GG T+ G +R+ +E+ + P +M++K+I + E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 342 L 340
L
Sbjct: 230 L 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Frame = -3
Query: 591 VLGYGSLRHPRDHI*LHHEVRRGHP*GLYANTVLSGGTTMYPGIADRMQKEITA-LAPST 415
VL GS +P L E+++ LY VL G T+ Q +TA
Sbjct: 302 VLSGGSTMYPGLPSRLEREIKQ-----LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQK 356
Query: 414 MKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 289
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 357 FKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -1
Query: 665 PDGSGHHYGKRKDSVAQKAFLPNPSFLGMEACGIHETTYNSIMKCDVDIRKD 510
PDG G + A+ F PS LG + GIHE+ + SI KCD+D+R +
Sbjct: 2288 PDGQSIRIGSERFRAAEPLF--QPSLLGRDIDGIHESIFKSIKKCDIDLRAE 2337
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 358
L N VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 357 SILASLSTFQQMWISKQEYDE 295
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_7894| Best HMM Match : Pox_A14 (HMM E-Value=0.13)
Length = 833
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 537 HDGVICGLVDAASFHTQERRVG-KKSLLGNGIFSFPIVMT*PVGEVRK 677
H + CGLV A + TQE + ++SLLG+ + I + PV VR+
Sbjct: 363 HLFISCGLVHAVGYLTQEEKAALRQSLLGSLLNGVQIHLENPVARVRE 410
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 501 NTVLSGGTTMYPGIADRMQKEITALAP 421
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 28.3 bits (60), Expect = 6.5
Identities = 30/118 (25%), Positives = 43/118 (36%)
Frame = -2
Query: 592 RSWVWKLAASTRPHITPS*SATWTSVRTVRQHRIVRWYHHVPWNRRPYAKGNHSSRPIDN 413
R+ W L A R H+ S T R++ + HVP + H P
Sbjct: 386 RTCYWALYAHYRAHVPRRYSLTHFRAHVPRRYLFTHFRAHVPGHYPLTHFRTHG--PGVT 443
Query: 412 ED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVLLNARASLP 239
H S + R PL T V + GV R P C+Q +L + R+ +P
Sbjct: 444 RSLPHTCSWALPAHYRIHVPRRYPL---TTVHMFPGVTRSLPCTCSQALLAHYRSHVP 498
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,565,813
Number of Sequences: 59808
Number of extensions: 533044
Number of successful extensions: 1511
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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