Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0104
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   4.7  
SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)             28   6.2  

>SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 850

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 320 CSRCDVTEPARRPETPCIALSITTLQ 397
           CS C VT+ + R  T C+ L +  L+
Sbjct: 536 CSTCPVTQKSNRERTSCVDLPVVALK 561


>SB_55265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 333 TSPS--PRVVPKHPVSHYPLQLYNAIHTRIVTMTIV 434
           TSPS   RV+ +HPV +YP    +   TR++T  ++
Sbjct: 440 TSPSRTTRVITRHPVKYYPCTSPSRT-TRVITRNVL 474


>SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)
          Length = 551

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/69 (24%), Positives = 26/69 (37%)
 Frame = -2

Query: 522 RGDVTRLHTACVFCFSNGQ*ITQCRNLFARR*SSSLSVYESRCKVVMDSAIQGVSGRRAG 343
           R  V R  T CV C    Q + +  N + +      ++ E RC++V       V      
Sbjct: 385 RTTVVRAITPCVICVLERQDMNKVLNYYPKALQKLHNIVEDRCEIVQSKG-NSVLEMTTD 443

Query: 342 SVTSQRLHT 316
               + LHT
Sbjct: 444 EANHELLHT 452


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,028,031
Number of Sequences: 59808
Number of extensions: 317192
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)