Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0125
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              132   1e-31
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)                       28   3.1  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_3375| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.5  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  132 bits (319), Expect = 1e-31
 Identities = 64/73 (87%), Positives = 67/73 (91%)
 Frame = +1

Query: 175 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 354
           WVPVTKLGRLV++ KI  LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67

Query: 355 QRTRFKAFVAIGD 393
           QRTRFKAFVAIGD
Sbjct: 68  QRTRFKAFVAIGD 80


>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
          Length = 174

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 170 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 280
           KSG L     ++F  E   +S+AF C LY +KN  SL
Sbjct: 56  KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 154  RAHDHGRDH-DRVHEDR 107
            R H H RDH DR H+DR
Sbjct: 1716 RGHRHDRDHDDRDHDDR 1732


>SB_3375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 175 TLSGLPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLLNDGTXI 5
           TLSG      D G  H R+ + +R L L   IR+  ++   HRL Q   LL  G  I
Sbjct: 34  TLSGYLRVLADDGLTH-RLAQVKRLLTLSGYIRVLADDGLTHRLAQVKRLLTKGGYI 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,648,936
Number of Sequences: 59808
Number of extensions: 188252
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)