Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0124
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 36 0.040
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 36 0.040
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.053
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 34 0.092
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.86
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 31 0.86
SB_18040| Best HMM Match : C1_3 (HMM E-Value=0.055) 31 1.1
SB_50659| Best HMM Match : PCMT (HMM E-Value=1.8) 30 1.5
SB_16944| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_58451| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_11342| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_40135| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.6
SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 29 3.5
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32) 29 3.5
SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.6
SB_53362| Best HMM Match : RHD (HMM E-Value=0.94) 29 4.6
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038) 29 4.6
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022) 29 4.6
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68) 28 6.0
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.0
SB_9723| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1) 28 6.0
SB_6514| Best HMM Match : hATC (HMM E-Value=0.024) 28 6.0
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_48175| Best HMM Match : hATC (HMM E-Value=0.024) 28 6.0
SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_55137| Best HMM Match : hATC (HMM E-Value=0.059) 28 8.0
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.0
SB_41210| Best HMM Match : MAAL_N (HMM E-Value=0.7) 28 8.0
SB_38409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.0
SB_30965| Best HMM Match : Ribosomal_S9 (HMM E-Value=9.6) 28 8.0
SB_20752| Best HMM Match : hATC (HMM E-Value=0.04) 28 8.0
SB_47551| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6) 28 8.0
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0) 28 8.0
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVE 231
C +CG F T K N H+ K K N+ AN +E
Sbjct: 374 CPICGLVFKTTKSRNSHVKKCAQKNNIPANQVIE 407
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 35.5 bits (78), Expect = 0.040
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-----INDHIR--EVKNGFFCEYC 288
C VC FPTE RH + + +EF + HIR + + C +C
Sbjct: 93 CFVCSKAFPTEIALKRHNNVHDRINKCTCSYCGKEFNTSRNMKRHIRFHTQEKPYKCSHC 152
Query: 289 NKYISGPTKKRLHILENTHINNK----GIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTC 456
+K S + + H TH K I + +N + F + A +G HTC
Sbjct: 153 SKAFSDASILKRH--TRTHTKEKPYVCEICGKAFIQSNGLRFHQIVHTGAQPNGCKIHTC 210
Query: 457 LICNIKFG---DMEIHIST 504
C+ FG D+ H+ T
Sbjct: 211 DFCSKAFGRHSDLVRHVRT 229
>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVE 231
C +CG F T K N H+ K K N+ AN +E
Sbjct: 374 CPICGLVFKTTKSRNSHVKKCAQKNNIPANQVIE 407
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 35.1 bits (77), Expect = 0.053
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Frame = +1
Query: 28 SRVLST--AAGSHSRTSKMIPKLNRNAILVGKVHSC---CLVCGNYFPTEKDANRHI--- 183
SR ST A+G+ R + + N I+ K + C CG ++ D NRH
Sbjct: 336 SRKTSTKVASGAKKRKTDRGKEYNGTGIIKKKRYRQDVECPTCGKSLGSKTDLNRHAVVH 395
Query: 184 -SKKGHKKNLEANGFVEE-FINDHIREVKNG--FFCEYCNKYISGPTKKRLHILENTHIN 351
+K K + + F ++ + H + +NG FFC++C K + +H+ H
Sbjct: 396 SGEKPFKCTICSKAFSQKGDLTRHSQNHENGKKFFCKFCAKGFNRKDVYNVHL--RIHTK 453
Query: 352 NKGIR-NLERVGNNIVAFKNVTIAKAAWH-GIVGHTCLICNIKFGDMEI---HIST-KEH 513
K + ER G A K++ + H G+ + C +C+ F + H T +E
Sbjct: 454 EKPFKCQHERCGKKF-ARKDLFEYHSRTHSGLKPYRCRLCDKYFAQRSLVRSHERTHQEK 512
Query: 514 LFKLVQTEVKFATHKGLYR 570
FK ++ F L R
Sbjct: 513 PFKCSDCKMSFRQRISLQR 531
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 34.7 bits (76), Expect = 0.070
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 202 KNLEANGFVEEFINDHIREVKNGFFCEYCNK 294
KN +E+F+N I E N +FCE CNK
Sbjct: 156 KNHNLQDSLEQFVNGEILEGDNAYFCEKCNK 186
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 34.7 bits (76), Expect = 0.070
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 202 KNLEANGFVEEFINDHIREVKNGFFCEYCNK 294
KN +E+F+N I E N +FCE CNK
Sbjct: 148 KNHNLQDSLEQFVNGEILEGDNAYFCEKCNK 178
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 34.3 bits (75), Expect = 0.092
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 28 SRVLSTAAGSHSRTSKMIPK---LNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGH 198
+++LS+A S S+ + PK +N +I V CC +CG F K +RH +
Sbjct: 852 NKILSSAKNSSSKLMETFPKSKTINPQSISV----YCCSICGASFGKSKALSRHHRRIHR 907
Query: 199 KKNLEANGFVE 231
KN+ +G E
Sbjct: 908 GKNIIKSGSTE 918
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 33.1 bits (72), Expect = 0.21
Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 11/167 (6%)
Frame = +1
Query: 202 KNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGPTKKRLHILENTHINNKGIRNLERV 381
K G V + H E F C YC+K S +HI +T N+
Sbjct: 412 KRFATTGQVTSHMRTHTGE--QPFKCTYCDKAFSIKGNLTVHIRRHT---NERPYVCTTC 466
Query: 382 GNNIVAFKNVTIAKAAWHGIVGHTCLICNIKF---GDMEIH--ISTKEHLFKLVQTEVKF 546
G + + + + + C IC KF G + IH I T+E + Q E F
Sbjct: 467 GKSFTVISQLVMHNRSHTDERPYKCDICGKKFRQQGGLSIHKKIHTEEKPHECTQCEKAF 526
Query: 547 ATHKGLYRTMK----ENSVHCLTCNEVI--KTATQIFVSLHFSHPKH 669
T L R + E C C + K + I + +H + +H
Sbjct: 527 ITKAKLDRHFRTHSGEKPYRCEICEKSFRDKDSLNIHMRIHNNDKRH 573
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 31.9 bits (69), Expect = 0.49
Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 14/191 (7%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-------INDHIREVKNGFFCEYC 288
C C F T++ HI +++ N + F ++ H+ K F CE C
Sbjct: 131 CSTCNKAFATKQTLIVHIRVHTNERPFVCNECGKAFKTSGDLGVHKHLHSGKRPFKCEQC 190
Query: 289 NKYISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICN 468
+K + H+ +T K + G + + + + H V C C
Sbjct: 191 DKGFLKKSSLTYHLTLHT---GKRPYQCQECGKSYRLRSELNYHERS-HKCV-FPCKECG 245
Query: 469 IKFGD---MEIHISTKEHLFKLVQTEVKFATHKGL----YRTMKENSVHCLTCNEVIKTA 627
F +E+H+ K + FATHK L + V C CNE+ +
Sbjct: 246 KSFRSSYLLEVHLRRHAIKTKCKYCKEGFATHKELETHVLSVHSDALVSCKLCNELFEGE 305
Query: 628 TQIFVSLHFSH 660
++ V + SH
Sbjct: 306 KRLRVHISKSH 316
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 244 DHIREVKNGFFCEYCNKYISGPTKKRLHILENTHINNK 357
+ + +K + CE+C KY+ PT R H++ + K
Sbjct: 470 EEYQRLKKIYLCEFCLKYMKSPTILRRHMVVTVTVTRK 507
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Frame = +1
Query: 115 KVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-------INDHIREVKNGF 273
K+H C VC F + H H++ + + F I++ I + +
Sbjct: 271 KIHKC-EVCSRVFNKCSNLKAHALSHSHERPYACDKCDKTFQRTSQLVIHNRIHNSETPY 329
Query: 274 FCEYCNKYISGPTKKRLHIL 333
C+ C K G T RLH+L
Sbjct: 330 SCDKCEKSFRGRTNLRLHLL 349
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEAN---------GFVEEFINDHIREVKNG-FFC 279
C CG FP E N H+ K + K E + + H + + G + C
Sbjct: 344 CKECGELFPKEDKLNAHVLKHPNYKAFECHICHSCYETLACLRRHATVHTTKQRKGRYAC 403
Query: 280 EYCNKYISGPTKKRLH 327
YC K ++ P+ + H
Sbjct: 404 AYCGKIMAKPSALKEH 419
>SB_18040| Best HMM Match : C1_3 (HMM E-Value=0.055)
Length = 108
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 106 LVGKVHSCCLVCGNYFPTEKDANRHISKKGHK-KNLEANGFVEEFINDH--IREVKNGFF 276
+ G CC++CG + P ++D +HI+ K K A G + FI + G+
Sbjct: 34 IAGLNKDCCVICGAHVPFKQD--KHIAMLCQKHKPFVAPGHKKCFICERPAFGNTHKGYT 91
Query: 277 CEYCNKY 297
C C Y
Sbjct: 92 CMVCTSY 98
>SB_50659| Best HMM Match : PCMT (HMM E-Value=1.8)
Length = 398
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + T + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 39 KNISTHDRIQQYPGEGLTIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 87
>SB_16944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + T + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 39 KNISTHDRIQQYPGEGLTIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 87
>SB_58451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -1
Query: 368 FRMPLLLICVFSKIWS---LFLVGPDMYLLQYSQKNPFLTSLMWSFINSSTKPLASKFF 201
F+M L+++ VF WS + + +Y +Q+ +T+ + +F+NSS P FF
Sbjct: 412 FKMVLMIVAVFLVCWSPHFILIFYGSLYQIQFPAAVKAVTTWL-TFLNSSFNPFLYGFF 469
>SB_11342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + + + G T+KE + CL C E++ + I ++ H + KH
Sbjct: 39 KNISIHDRIQQYPGEELTIKEGELFCLACREIVSSKNSI-LTTHLASKKH 87
>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.9 bits (64), Expect = 2.0
Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 7/157 (4%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEFI-------NDHIREVKNGFFCEYC 288
C CG T + +H+ HKK + +EF+ + + + +N C C
Sbjct: 106 CGNCGKDMATPERLAKHMET--HKKKFGCDICEKEFVFYSSLEKHRKVHQERNPNHCHLC 163
Query: 289 NKYISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICN 468
K P+K ++H+ ++T + E G ++ K G C +C
Sbjct: 164 EKEFDTPSKLKVHMRKHT---QEKPYECETCGKQFRVTSDLIRHKRIHTGCKPFLCEVCG 220
Query: 469 IKFGDMEIHISTKEHLFKLVQTEVKFATHKGLYRTMK 579
F H + HL + V + ++ T +T K
Sbjct: 221 QGF---NCHANRNRHL-RTVHSNIRPYTCNNCQKTFK 253
>SB_40135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 346 INNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICNIKFGDMEIHISTKE 510
I K ++N GN I F+N WHG CL+ KFG + + TK+
Sbjct: 162 IQGKVMQNASLNGNYIFLFQNPKDGSPIWHG----KCLLDTGKFGYLFRDLKTKQ 212
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Frame = +1
Query: 253 REVKNG-FFCEYCNKYISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAA 429
R++ NG CE CNK P+ + H+ H N K + E G + +
Sbjct: 769 RKLSNGPRICEECNKAFKYPSDLKKHL--QIHTNIKKFK-CEECGRLFRRLHQLNVHSRI 825
Query: 430 WHGIVGHTCLICNIKF---GDMEIHISTK-EHL 516
G + C C + F + +HI T+ +HL
Sbjct: 826 HTGEKPYVCNRCGVSFRHDSTLTMHIRTRHDHL 858
>SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 383 PTLSRFRMPLLLICVFSKIWSLFLVGPDMYLLQYSQKNPFLTS 255
PT F P+ + C FSK W+ +M + + +P LTS
Sbjct: 660 PTRQDFTSPIAVQCAFSKQWNFRQEAMEMLEQEMTSSSPDLTS 702
>SB_20597| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 268
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 7/126 (5%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-------INDHIREVKNGFFCEYC 288
C CG F +D RHI +K + + F +D I + C+ C
Sbjct: 136 CETCGRRFTESRDLARHIRSHTGEKPYQCMKCGKSFAHKCTLVTHDRIHTGVRPYSCKVC 195
Query: 289 NKYISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICN 468
NK + + H E TH+ + + ++ KN+ + + +TC C
Sbjct: 196 NKTFVQISTLKSH--EKTHLKKPVVWSCDQCMRTF--SKNIQLVSHKRSHLPKYTCETCG 251
Query: 469 IKFGDM 486
F +
Sbjct: 252 ETFSKL 257
>SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISK-----KGHKKNLEANGFV-EEFINDHI--REVKNGFFCEY 285
C+ CG+ F D RH+S K HK + F + + +HI + F CE
Sbjct: 232 CIQCGHRFRRSSDLVRHVSSVHSKIKPHKCQECSKAFSRKSHLRNHILSMHTHDQFECEQ 291
Query: 286 CNKYISGPTKKRLH 327
C K+ + H
Sbjct: 292 CQKFFDSYNQLHNH 305
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +1
Query: 190 KGHKKNLEANGFVEEFINDHIREVKNGFFCEYCNKYISGPTKKRLHILENT 342
K ++ N+ + + DH+ E C C+K S P+ + H+ +T
Sbjct: 344 KSYRNNVAVQNNHDGRMEDHLEEPDYSITCHVCHKIYSRPSTLKAHLRVHT 394
>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
Length = 382
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 8/145 (5%)
Frame = +1
Query: 250 IREVKNGFFCEY--CNKYISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAK 423
+ +V F CE+ CN + P++ H+ +H+ + + ER+ N + T
Sbjct: 125 VPDVPEKFLCEWMDCNLQFNCPSRFYEHV--ESHVMSV---DKERIVNG---GRKTTHVT 176
Query: 424 AAWHGIVGHTCLICNIKFGDMEIHISTKEHLFK------LVQTEVKFATHKGLYRTMKEN 585
W G + C ++ H+ T+E ++ + + KFA H T + N
Sbjct: 177 CQWTGCMTRVRNHCKLR---EHAHVHTREKVYACHVCGGMFASMSKFADHLSRQNTSELN 233
Query: 586 SVHCLTCNEVIKTATQIFVSLHFSH 660
++ C C+ + + + F H
Sbjct: 234 NIKCEFCDMTCPNPSALKQHIKFRH 258
>SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 365
Score = 28.7 bits (61), Expect = 4.6
Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 10/137 (7%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKNLEANGFVEEF-----INDH--IREVKNGFFCEYC 288
CL CG F +H S ++K+ E + F ++ H I F C+YC
Sbjct: 227 CLTCGKTFGHSVSLEQHKSIHTNEKSFECKECGKAFKRSSTLSTHMLIHSDTRPFPCQYC 286
Query: 289 NKYISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFKNVTIAKAAWHGIVGHTCLICN 468
K + + H H K + LE G N+ G +C +C
Sbjct: 287 PKRFHQKSDMKKHTY--IHTGEKPHKCLE-CGKAFSQSSNLITHSRKHSGFKPFSCQVCR 343
Query: 469 IKF---GDMEIHISTKE 510
F D+ H+ T E
Sbjct: 344 RSFYRKVDLRRHMYTHE 360
>SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)
Length = 367
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 249 VVIYKFFHEAVSFQILLVAF--FRNMSVSILLSGEVIATDKTAGVD 118
++ YK F++ +S +I F F +S S LLS E IA K G+D
Sbjct: 213 LIYYKMFNDLISGKIKSKQFLKFLKLSGSKLLSEEPIAVAKGYGID 258
>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
Length = 676
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 137 KNISIHDRIQQYSGEELTIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 185
>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
Length = 865
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 94 KNISIHDRIQQYSGEELTIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 142
>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 288 KNISIHDRIQQYPGEELTIKDGKLFCLACREIVSSKNSI-LTTHLASKKH 336
>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
Length = 794
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 241 NDHIREVKNGFFC-EYCNKYISGPTKKRLHILENTHINNK 357
N H+ F+C CN YI+G + H +TH+ NK
Sbjct: 423 NVHVLYAFASFWCIAMCNMYITGYSMIDYHDTMSTHLKNK 462
>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 777
Score = 28.3 bits (60), Expect = 6.0
Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 11/203 (5%)
Frame = +1
Query: 61 SRTSKMIPKLNRNAILVGKVHSCCLVCGNYFPTEKDANRHISKKGHKKNLEANGFV---E 231
SR K + +++ K + C CG F + + RH+ +K + + V +
Sbjct: 449 SRGEKSPENTSNDSLRTEKTYKCD-ECGKCFNRKTNLKRHLIIHSRRKPYKCDECVLYPK 507
Query: 232 EFINDH--IREVKNGFFCEYCNKYISGPTKKRLHILENTHINNKGIRNLERVGNNIVAFK 405
+H I + + C+ C K S + H++ H K + + G +
Sbjct: 508 NKPEEHLIIHSKRKSYKCDECGKCFSESGNLKKHLI--IHSRRK-LYKCDEFGKSFTQHY 564
Query: 406 NVTIAKAAWHGIVGHTCLICN---IKFGDMEIHIS--TKEHLFKLVQTEVKFATHKGLYR 570
++ G + C C IKFG ++ H+S T++ +K + F+ L R
Sbjct: 565 HLKTHVRIHSGQKPYQCDECGKCYIKFGALKRHLSIHTEQKPYKCDKCGKGFSESGALKR 624
Query: 571 TMKENSVH-CLTCNEVIKTATQI 636
+ +S C+E K TQ+
Sbjct: 625 HVIIHSRRKPYKCDECGKCFTQL 647
>SB_9723| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)
Length = 387
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 39 KNISIHDRIQQYPGEELTIKDGELFCLACREIVSSKKSI-LTTHLASKKH 87
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 290 KNISIHDRIQQYPGEELTIKDGELFCLACREIVSSKKSI-LTTHLASKKH 338
>SB_6514| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K V + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 39 KNVSIHDRIQHYPGEELTIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 87
>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 220 GFVEEFIND-HIREVKNGFFCEYCNKYISGPTKKRLHILENT 342
G E+ IND + ++V G+ CE C K + ++H+ +T
Sbjct: 524 GCSEDMINDLNSKKVNKGYLCELCGKLYTRKYGLKIHMRIHT 565
>SB_48175| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K V + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 39 KNVSIHDRIQHYPGEELTIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 87
>SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 38 KNISIHDRIQQYPGEELTIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 86
>SB_55137| Best HMM Match : hATC (HMM E-Value=0.059)
Length = 619
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 571 TMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
T+K+ + CL C E++ + I ++ H + KH
Sbjct: 56 TIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 87
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 178 HISKKGHKKNLEANGFVEEFIND-HIREVKN--GFFCEYCNKYISGPTKKRLHILENT 342
H KK +K N GF ++ + + HI F CEYC + S H+L +T
Sbjct: 870 HNKKKMYKCNFCGKGFNDKIVLEKHIYSHTGVKPFKCEYCGRAFSDSLSIEKHLLVHT 927
>SB_41210| Best HMM Match : MAAL_N (HMM E-Value=0.7)
Length = 536
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 571 TMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
T+K+ + CL C E++ + I ++ H + KH
Sbjct: 56 TIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 87
>SB_38409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 297 VLVTVFTEESVFDLPNVVIYKFFHE 223
+LV +FT S+F + N++I K +H+
Sbjct: 55 LLVLIFTSFSIFGIRNLLITKLYHD 79
>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 615
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 130 CLVCGNYFPTEKDANRHISKKGHKKN 207
C +CG+ F D RH++ ++KN
Sbjct: 469 CSICGHAFVKSADLKRHVAAHNNEKN 494
>SB_30965| Best HMM Match : Ribosomal_S9 (HMM E-Value=9.6)
Length = 140
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 571 TMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
T+K+ + CL C E++ + I ++ H + KH
Sbjct: 30 TIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 61
>SB_20752| Best HMM Match : hATC (HMM E-Value=0.04)
Length = 578
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 526 VQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKHK 672
V + + KG ++ N V+C C EV+ I + +H KH+
Sbjct: 69 VSAKQRVEEFKGEDLIVRNNEVYCAACKEVVSVKMSI-MKVHVKSKKHE 116
>SB_47551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 571 TMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
T+K+ + CL C E++ + I ++ H + KH
Sbjct: 105 TIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 136
>SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6)
Length = 538
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 571 TMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
T+K+ + CL C E++ + I ++ H + KH
Sbjct: 56 TIKDGKLFCLACREIVSSKKSI-LTTHLASKKH 87
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 520 KLVQTEVKFATHKGLYRTMKENSVHCLTCNEVIKTATQIFVSLHFSHPKH 669
K + + + G T+K+ + CL C E++ + I ++ H + KH
Sbjct: 39 KNISIHDRIQQYPGEELTIKDGKLFCLACREIVSSKKSI-LTKHLASKKH 87
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 271 FFCEYCNKYISGPTKKRLHILENTHI 348
F+C+ CN YI+ K LH H+
Sbjct: 1366 FYCKLCNCYIASVITKELHAKSIKHV 1391
>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
Length = 875
Score = 27.9 bits (59), Expect = 8.0
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = -1
Query: 419 AIVTFLKATILFPTLSRFRMPLLLICVFSKIW--SLFLVGPDMYLLQYSQKNPFLTSLMW 246
AI TFLK + F L RF L C S++W +L +Q+ P SL W
Sbjct: 388 AIETFLKNSFFFSDLLRFGEVLRECCDLSQLWFREFYLELTMGARIQF----PIEMSLPW 443
Query: 245 SFIN---SSTKPLASKFFLWP 192
N S +P ++ L+P
Sbjct: 444 ILTNHILESKEPSMMEYVLYP 464
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,307,160
Number of Sequences: 59808
Number of extensions: 483150
Number of successful extensions: 1509
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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