Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0111
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 58 7e-09
SB_112| Best HMM Match : DUF1059 (HMM E-Value=7.3) 56 2e-08
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_23402| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_11240| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22) 33 0.31
SB_8371| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 33 0.31
SB_55376| Best HMM Match : Polyoma_agno (HMM E-Value=6.2) 32 0.53
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017) 32 0.53
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 31 0.71
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 31 0.71
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 31 0.93
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069) 30 1.6
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8) 30 1.6
SB_14519| Best HMM Match : Ank (HMM E-Value=1.9e-17) 30 1.6
SB_54140| Best HMM Match : TFA (HMM E-Value=4.6) 29 2.8
SB_47001| Best HMM Match : Asparaginase_2 (HMM E-Value=2.5e-40) 29 2.8
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_56838| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 29 3.8
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05) 29 3.8
SB_45538| Best HMM Match : HC2 (HMM E-Value=0.55) 29 5.0
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 29 5.0
SB_21264| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 5.0
SB_26241| Best HMM Match : B1 (HMM E-Value=2.5) 28 6.6
SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008) 28 6.6
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 28 6.6
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_36361| Best HMM Match : ITAM (HMM E-Value=3.5) 28 8.7
SB_35288| Best HMM Match : ITAM (HMM E-Value=3.5) 28 8.7
SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07) 28 8.7
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89) 28 8.7
>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
Length = 539
Score = 58.0 bits (134), Expect = 7e-09
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 91 IPPHFNLLSSTDQFNPKADVSSGEEYPTLLHWAARFGLERVCWQ-LLECPGGGAAIAMRN 267
+P FNL+ + N + +S YPTLLH+AA FGL ++ + LLECPG A +R+
Sbjct: 1 MPRGFNLIGLHN--NNVDEEASKSMYPTLLHFAAAFGLHQLATECLLECPGAKEASTLRD 58
Query: 268 VRHRTPADLARDFKHYRLAD 327
RTP D+AR+ LA+
Sbjct: 59 CHGRTPVDIAREGDFNSLAE 78
>SB_112| Best HMM Match : DUF1059 (HMM E-Value=7.3)
Length = 291
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 139 KADVSSGEEYPTLLHWAARFGLERVCWQ-LLECPGGGAAIAMRNVRHRTPADLARDFKHY 315
+A +S YPTLLH+AA FGL ++ + LLECPG A +R+ RTP D+AR+
Sbjct: 20 EAKEASKSMYPTLLHFAAAFGLHQLATECLLECPGAKEASTLRDCHGRTPVDIAREGDFN 79
Query: 316 RLAD 327
LA+
Sbjct: 80 SLAE 83
>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 41.5 bits (93), Expect = 7e-04
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +1
Query: 46 KEQLDSWMLNAFQ-KNIPPHFNLLSSTDQFNPKADVSSGEEYPTLLHWAARFGLERVCWQ 222
+ LD + +AF+ ++ P + L+ + S G+E TLLH +AR G +
Sbjct: 598 RNTLDYRLTSAFEFLDLSPSWTLVGENGKH---VKTSKGQE--TLLHLSARLGFTQFAEY 652
Query: 223 LLECPGGGAAIAMRNVRHRTPADLARDFKHYRLADM 330
L++ PG A+ M + + ++P D+A++ LAD+
Sbjct: 653 LVDLPGASQALGMCDTKGKSPIDVAKEKGLRSLADV 688
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +1
Query: 145 DVSSGEEYPTLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKHYRLA 324
DV+ + +L R G + L++ PG A+ M + + ++P D+A++ LA
Sbjct: 675 DVAKEKGLRSLADVFLRLGFTQFAEYLVDLPGASQALGMCDTKGKSPMDVAKEKGLLSLA 734
Query: 325 DMLSDH 342
D+ H
Sbjct: 735 DVFLRH 740
>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 36.3 bits (80), Expect = 0.025
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +1
Query: 172 TLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKHYRLADMLSDHMKI 351
T L WA G + W+LL G + + R R P +ARD +Y + D + ++
Sbjct: 839 TALMWACGLGHKDAVWELL-LTGDICTLTTPDARGRMPLQIARDRGYYEVVDCIEEYYAS 897
Query: 352 SEFSNMYYYLKNMSDNEKQDKTEE 423
S S + +++ D EE
Sbjct: 898 SP-SRQTALFNGLRSDDEDDIAEE 920
>SB_23402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 35.5 bits (78), Expect = 0.043
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 1 ALEFMCQTLGFKTTSKEQLDSWMLNAFQKNIPPHFNLL 114
A+ FMC++LG + LD + F++N+P FNL+
Sbjct: 95 AVSFMCESLGISPLDIQHLDEALAATFRRNMPRGFNLI 132
>SB_11240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 35.5 bits (78), Expect = 0.043
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 1 ALEFMCQTLGFKTTSKEQLDSWMLNAFQKNIPPHFNLL 114
A+ FMC++LG + LD + F++N+P FNL+
Sbjct: 12 AVSFMCESLGISPLDIQHLDEALAATFRRNMPRGFNLI 49
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 361 SNMYYYLKNMSDNEKQ---DKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDP 531
++ Y + N+ D EK+ DK EE++SK+EDL E + + + ++ + S D
Sbjct: 184 THKYDFTSNIIDREKELIKDKIEEVKSKQEDLS-QEHANVLSEKARIEAQRKSLTSEIDE 242
Query: 532 FSETCTQNLEEISDN 576
F + LEE+ N
Sbjct: 243 FIDAKVSLLEEMRSN 257
>SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22)
Length = 540
Score = 32.7 bits (71), Expect = 0.31
Identities = 34/92 (36%), Positives = 45/92 (48%)
Frame = +1
Query: 172 TLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKHYRLADMLSDHMKI 351
T +H AA G + C QLL GG I + H TP DLAR + H A +LS+H
Sbjct: 322 TPVHRAAIEGHVK-CLQLLIRAGGD--IEREDNEHNTPMDLARVWGHRPCARILSNHQ-- 376
Query: 352 SEFSNMYYYLKNMSDNEKQDKTEELESKEEDL 447
+YL + E+ K EE E KE++L
Sbjct: 377 -------WYLD--KEKERIKKLEE-EIKEQEL 398
>SB_8371| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 323
Score = 32.7 bits (71), Expect = 0.31
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 406 QDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDNSDE 585
Q+ EE E + +R ++ D D+ +D + D D +TC +EE+++N +
Sbjct: 158 QNIKEENEKLNDTIRKLQ--DNCDNDDDDDDDDD---DDADYDDKTCEAKMEEVTNNLRQ 212
Query: 586 S-EKQSRASFKLPKVKEQQLYQNELPCHDDTA 678
S E+Q + S KV+ QQ EL C D A
Sbjct: 213 STEEQHQLSH---KVQRQQQRIEELTCELDLA 241
>SB_55376| Best HMM Match : Polyoma_agno (HMM E-Value=6.2)
Length = 346
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 466 DTVDSPICEDPEQDVIVSPPDPFSETCTQNL----EEISDNSDESEKQSRASFKLPKVKE 633
D + +C P+ + I PP P + ++NL +E SD+++ Q RA ++ K +E
Sbjct: 204 DKDEDKVCGTPQNNAIHRPPPPGNPVSSENLPEYCKEFSDSTNLRALQ-RAEDRIRKRRE 262
Query: 634 QQLYQNE 654
Q Y E
Sbjct: 263 AQEYTTE 269
>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
Length = 1243
Score = 31.9 bits (69), Expect = 0.53
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Frame = +1
Query: 271 RHRTPADLARDFKHYRLADMLSDHMK-ISEFSNMYYYL--KNMSDNEKQDKTEELESKEE 441
R D A F+ ++ AD+ D ++ I + N+ K + D+EK +S++
Sbjct: 178 RRSGATDYAALFEEWKKADV--DLLREIRDVGNVVVQSVSKEIQDSEKSISKVIQDSEKS 235
Query: 442 DLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDNS-DESE-----KQSR 603
++I+ + S D EQ V E C Q L+++++ DE+E KQ +
Sbjct: 236 ISKVIQDSEKSISKEIRDLEQSVREEVIRSIHEVC-QKLDDVTNKDLDEAERVEFAKQEK 294
Query: 604 ASFKLPKVKEQQLYQ-NELPCHDDTADRIQQAIENDY 711
S L VK L Q +L D D I+QAI Y
Sbjct: 295 DSSFLEDVKVVLLLQCRDLVDVSDWKDVIRQAIPEHY 331
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 31.5 bits (68), Expect = 0.71
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Frame = +1
Query: 379 LKNMSDNEKQDKTE-ELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQN 555
+ N ++EK+++ + +L E + +E ++S I E V S D ++ Q+
Sbjct: 1569 INNRINSEKENELQSKLSQAHEQIINLENRPQLESAISMVSESMVESSGDDMETQILRQD 1628
Query: 556 LEEISDNSDESEKQSRASFKLPKVKEQQLYQNE--LPCHDDTADRIQQAIE 702
LE + D+ E+Q++ +QQL + + L ++D +Q+ IE
Sbjct: 1629 LETLQSKYDKLERQNKLLQDQNSQLQQQLNERDRKLRDNEDEIMELQKVIE 1679
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 476 TRLSAKIQNKMS*CLPRIPSAKRARKIWKKF 568
+ L A++QN M C +IPS +RA ++ +KF
Sbjct: 561 SELQAQLQNFMDICFEKIPSTQRALRLIRKF 591
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 31.1 bits (67), Expect = 0.93
Identities = 27/122 (22%), Positives = 54/122 (44%)
Frame = +1
Query: 337 DHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIV 516
D ++ SE S+ + LKN + K + L+S+ ++ TC+ + I E EQ+ +
Sbjct: 1170 DEVEASEPSDAFESLKNQLERYKNIENLLLQSEAKNAETERTCEARITGIKEAYEQE-LE 1228
Query: 517 SPPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQA 696
+ E T ++I S + E++ KL + ++ + Q E + R++
Sbjct: 1229 NASASHKEALTALNQKIKQLSSDKEEKMIQIGKLKRQVQELMEQQESGAEMNVDSRLEMI 1288
Query: 697 IE 702
E
Sbjct: 1289 RE 1290
>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/100 (23%), Positives = 44/100 (44%)
Frame = +1
Query: 388 MSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEI 567
+S E DK ++ + + E T D+P + P QD++ + P P ++ + +E+
Sbjct: 484 VSQKENGDKNNNIKEEGANTPDNEKSAT-DTPSDDKPHQDLVPTSPPP-AKPLSDRVEKW 541
Query: 568 SDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRI 687
S+ Q R+S +L E + L +A+ I
Sbjct: 542 ERISNHGLDQERSSMRLSSELEDDAFLPSLSDRRQSAEDI 581
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 30.7 bits (66), Expect = 1.2
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Frame = +1
Query: 295 ARDFKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEED-LRIIETCDT 471
AR+ KH L + L D+ + + YY + + ++D+ E+ES E D R +E +
Sbjct: 362 ARERKH--LLEFLEDYDDNRD--DPKYYKSSSMNRRRRDREAEMESDERDRQRELEEIEE 417
Query: 472 VDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQN 651
+ + + P +D +P ++S S+ E+ S FK PK+ Q +Q
Sbjct: 418 IRKRLVDMPAED----DNEPM---------QVSRESEREEEDSSDGFK-PKL--QPTFQ- 460
Query: 652 ELPCHDDTADRIQ 690
P H +TA +++
Sbjct: 461 PAPAHIETAPKVR 473
>SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 30.3 bits (65), Expect = 1.6
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +1
Query: 382 KNMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQN-- 555
K+M++ EK +ELE +E+DL E + E +IV + + Q
Sbjct: 348 KDMAEEEKNAVAKELEKREKDLMEAEEEQNKLQERLKAVESKIIVGGVNLLEKAKEQELL 407
Query: 556 LEEISDNSDESEKQSRASFKLPKVKEQQ 639
LEE + E ++ KL K KEQ+
Sbjct: 408 LEESAKELAERRERQENLQKLIKEKEQE 435
>SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069)
Length = 246
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = +1
Query: 394 DNEKQDKTEELESKEEDLRIIETCDTVDSPI-----CEDPEQDVIVSPPDPFSETCTQNL 558
D + E LE+ +E L E+ +T+D P+ D + + PD ET ++L
Sbjct: 30 DESLETLDESLETLDESLD--ESLETLDEPLETLDESLDESLETLDESPDESLETLDESL 87
Query: 559 EEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIE 702
+E + DES + S + + ++L ++ D++ D + ++
Sbjct: 88 DESLETLDESLETLHESLETLQESLEKLLESLHESLDESLDESLETLD 135
>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
Length = 405
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +1
Query: 391 SDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEIS 570
+D++K + E + +D + E +SP +D E+ P P ET + +
Sbjct: 268 ADDKKSTEPAEPVEQSQDSGVAEA----ESPAEQDSEEGTPGMSP-PVDETDGNKVHRST 322
Query: 571 DN-SDESEKQSRASFKLPKVKEQQL-YQNEL 657
+ SD+ K+ + ++ ++KEQ+L YQ ++
Sbjct: 323 SSISDDGHKKRKLQLEIDRLKEQELEYQKKI 353
>SB_14519| Best HMM Match : Ank (HMM E-Value=1.9e-17)
Length = 169
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/57 (38%), Positives = 26/57 (45%)
Frame = +1
Query: 172 TLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKHYRLADMLSDH 342
T LHWAA G R LLE GA + V TPA A + Y + +L DH
Sbjct: 48 TALHWAAGKGHARCVKLLLEY---GANPGAKMVGGWTPAHCAAETGRYNVLKVLVDH 101
>SB_54140| Best HMM Match : TFA (HMM E-Value=4.6)
Length = 337
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 517 SPPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDD 672
S DP E T ++ SDN+DES+K +P + Q ++EL C D
Sbjct: 104 SSSDPRLENTTSTRQQQSDNADESKKTCAEQRVVPMTEVQ---EHELLCRLD 152
>SB_47001| Best HMM Match : Asparaginase_2 (HMM E-Value=2.5e-40)
Length = 423
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 379 LKNMSDNEKQDKTE-ELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQN 555
+K M + E +K + E E KEED + + ++ ++ + PE+ V D E +
Sbjct: 211 VKKMEEKENNEKLQKEKEDKEEDKKDFDCVNSFETELQSKPEKREEVKEQD--IELVLKM 268
Query: 556 LEEISDNSDESE 591
+EEI N DE +
Sbjct: 269 IEEIK-NIDEHD 279
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +1
Query: 400 EKQDKTEELESK-EEDLRIIETCDTVDSPICED-PEQDVIVSPPDPFSETCTQNLEEISD 573
EK+ T +LES E+ + I + +V + +DV+ S +E C QN EISD
Sbjct: 581 EKRAITTDLESSIEKRVSIEKELQSVKEQLETGYRSRDVVESELAVATERCRQNAAEISD 640
Query: 574 NSDE--SEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIEND 708
E S + +F+ K ++ Q D D + ++E +
Sbjct: 641 QQHEILSLNEENTAFQQQLEKREKHIQELSESLDSLQDSLATSLEKN 687
>SB_56838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 172 TLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKH 312
T LHWA V + + GA+I + N + TPAD+A + K+
Sbjct: 110 TALHWAVSSNNHNVIHPIAKA---GASIDLVNAKGETPADIATEKKN 153
>SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 145 DVSSGEEYPTLLHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARD 303
++ G T LH AA+ G ++ LL+ GGA + +RNV + D+A D
Sbjct: 67 NIQDGLGKSTALHLAAKNGHLKIIQVLLD---GGAKLNLRNVEGKIAEDVALD 116
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/94 (27%), Positives = 43/94 (45%)
Frame = +1
Query: 394 DNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISD 573
D EKQ + +E K ++ + E + P + +QD PD E Q+ E+
Sbjct: 851 DLEKQYQKQEKPDKGQEKQDREQ----EKPDKDQEKQDREQEKPDKDQEK--QDHEQEKP 904
Query: 574 NSDESEKQSRASFKLPKVKEQQLYQNELPCHDDT 675
+ D+ EKQ R K K +EQ + + P ++T
Sbjct: 905 DKDQ-EKQDREQEKTDKEREQPYQEQDKPDQENT 937
>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
Length = 397
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 178 LHWAARFGLERVCWQLLECPGGGAAIAMRNVRHRTPADLARDFKHYRLADMLSDH 342
LH AA G L+E GA + R TP DLA + H +ADM+ ++
Sbjct: 34 LHEAAARGYTDCFQALVEM---GAPLHPRTTEGDTPRDLALRYGHVHIADMIDNY 85
>SB_45538| Best HMM Match : HC2 (HMM E-Value=0.55)
Length = 333
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 337 DHMKISEFSNMYYYLKNMSDNEKQDKTEELESK--EEDLRIIETCDTVDSPICEDPEQDV 510
DH + F+ Y + + +SK + LR TC+ + + ED Q
Sbjct: 197 DHTQSKVFAKRLRYRTTCNQMYHTVSEDHTQSKVVAKRLRYRTTCNQMYHTVSEDHTQSK 256
Query: 511 IVSPPDPFSETCTQNLEEISDNSDESE 591
+V+ + TC Q +S++ +S+
Sbjct: 257 VVAKRLRYRTTCNQMYHTVSEDHTQSK 283
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/73 (20%), Positives = 35/73 (47%)
Frame = +1
Query: 400 EKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEEISDNS 579
E +D EE+++ + +++ + D +D P+ S P +E +N D+S
Sbjct: 139 EAEDDEEEVKTVSKKMKMASSHDILDDPLLSKEAAVPQESQPVKETERNRKNSSSGDDDS 198
Query: 580 DESEKQSRASFKL 618
D+ +++ + K+
Sbjct: 199 DDEKQEEKFDQKM 211
>SB_21264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 28.7 bits (61), Expect = 5.0
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +1
Query: 385 NMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICED-PEQDVIVSPPDPFSETCTQNLE 561
+ D E+QDK EE+E K+++ + + +D ED +QD E Q+ E
Sbjct: 63 DQEDMEEQDK-EEMEQKDKEDMDEQDKEDMDKQDKEDMDKQDKEEMDKQDKEEMDKQDKE 121
Query: 562 EISDNSDESEKQSRASFKLPKV-KEQQLYQNELP 660
E+ D D+ E + ++ K KE+ Q+ +P
Sbjct: 122 EM-DKQDKEEMDKQDKEEMDKQDKEEMDQQDRIP 154
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 588 RKAISCVVQTSKSQRTTTVPKRIAVSRRHSGQD 686
+K + C V T KS ++ T P+R AVSR + ++
Sbjct: 193 KKRLVCHVPTEKSGKSITCPQRKAVSRSRAHRE 225
>SB_26241| Best HMM Match : B1 (HMM E-Value=2.5)
Length = 155
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 624 SQRTTTVPKRIAVSRRHSGQD 686
S RTTT K IAVSRR++ +D
Sbjct: 54 SGRTTTSAKHIAVSRRYNSKD 74
>SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008)
Length = 700
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -3
Query: 612 ERRTRLLFGFIRVIRNFFQILRARFAEGIRGRHYDILFWIFAD 484
E + L+ I + F ++ + FA G+ HY +FW D
Sbjct: 473 EGADKTLYDVIFTFKTFTILVLSFFAGGLSAVHYTFIFWYLTD 515
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 484 ICEDPEQDVIVSPPDPFSETCTQNLEEISDNSDESE 591
I + ++D +SP +P T EEI N DESE
Sbjct: 242 IINNTKEDTFISPRNPPENTSKAFPEEIKRNIDESE 277
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 385 NMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSETCTQNLEE 564
N DNE+ ++ EE KEE+ +E + + E+ E ++ V + E EE
Sbjct: 27 NREDNEQDEEEEEEVEKEEEEEEVEEEEEEE----EEKEDEIEVEEEEEEKE---NEEEE 79
Query: 565 ISDNSDESEKQ 597
D DE E++
Sbjct: 80 NEDEEDEEEEE 90
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.3 bits (60), Expect = 6.6
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = +1
Query: 289 DLARDFKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCD 468
+LA +H +AD+ H + + + + ++K++ E+E + L E
Sbjct: 670 ELASTKRH--IADLQDKHEALKDELDKTEDENDALRDKKKELEAEIEELKRKLAESELNI 727
Query: 469 TVDSPICEDPEQDVIVSPPD-PFSETC-TQNLEEISDNSDESEKQSRASFKLPKVKEQQL 642
+ PI E ++ S PD F ++ + L+E + + + A KL K + L
Sbjct: 728 PIQQPIVEAQNVQIVQSSPDFDFGDSDELRRLQEDNISLRHKNSELEAESKLADDKRKDL 787
Query: 643 YQNELPCH 666
+ CH
Sbjct: 788 NDQLVGCH 795
>SB_36361| Best HMM Match : ITAM (HMM E-Value=3.5)
Length = 208
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 562 EISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIEN 705
+ ++ + E + ++F P+ K+ Y+N H DTAD Q +N
Sbjct: 131 DTANGNYEQIQAKNSTFASPQAKDNAAYENINGDHYDTADATQAQYDN 178
>SB_35288| Best HMM Match : ITAM (HMM E-Value=3.5)
Length = 145
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 562 EISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIEN 705
+ ++ + E + ++F P+ K+ Y+N H DTAD Q +N
Sbjct: 68 DTANGNYEQIQAKNSTFASPQAKDNAAYENINGDHYDTADATQAQYDN 115
>SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)
Length = 533
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Frame = +1
Query: 370 YYYLKNMSDNEKQD---KTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPPDPFSE 540
+Y+ N+ D EK + K EE++SK+ D + V+ + +++ + S D F
Sbjct: 113 FYFTSNIIDREKDEIKAKLEEVKSKQTDSSQLHD-KVVNEKARIEAQKNSLTSEIDDFIN 171
Query: 541 TCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDD 672
LE++ R++ K + + + +L CH+D
Sbjct: 172 AQISTLEKM-----------RSNLKDEVISDYEKRNKQLDCHED 204
>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
Length = 1328
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 310 HYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIET 462
H+R+ ++ +H KI + + Y +N ++ EELES + L +T
Sbjct: 608 HFRMPEVFEEHKKIVNANRVQY--ENSLKMRRERFVEELESYSKQLEEFQT 656
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,904,688
Number of Sequences: 59808
Number of extensions: 460826
Number of successful extensions: 1715
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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