Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0098
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        65   6e-11
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   9e-09
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             56   2e-08
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            47   2e-05
SB_36002| Best HMM Match : Peptidase_A17 (HMM E-Value=9.3e-41)         32   0.37 
SB_20964| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_12736| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-11)         29   2.6  
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)                29   4.5  
SB_46360| Best HMM Match : EGF (HMM E-Value=0)                         29   4.5  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          29   4.5  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   26   5.1  
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)              28   6.0  
SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)           28   7.9  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
 Frame = +1

Query: 61  MASGVTVSDACKTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAE--YEQFLEDLQ 231
           M +G+ +       + EIKK     RY++F + ++K+  V    +   E  +E  L+DL 
Sbjct: 247 MEAGLNIKGEVTDGWNEIKKAASGLRYIIFKMDEKKENVVFEKKKMKCECSHEDVLDDLP 306

Query: 232 KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 411
                E RY   + +Y +      E + + KL L+ WCPD  ++K +M+ +++F  +KK 
Sbjct: 307 ---ADEPRYIALNLDYKNV-----EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKK 358

Query: 412 LVGVQKYIQATDLSEASHEAVEEKLR 489
             G  K ++  + SE S EA++E+L+
Sbjct: 359 CPGGAKCLEIQERSELSFEALKEELK 384


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
 Frame = +1

Query: 67  SGVTVSDACKTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAE--YEQFLEDLQKG 237
           +G+ +       + EIK      RY +F + ++K+  V    +   E  ++  L+DL   
Sbjct: 2   AGLNIKSDVTDGWNEIKMVASGLRYTIFKMDEKKENVVMEKKKMITECCHDDVLDDLP-- 59

Query: 238 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 417
            T E RY   + +Y ++     E +++ KL L+ WCPD   +K KM+ +++F  + K   
Sbjct: 60  -TDEPRYVALNLDYKNE-----EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCP 113

Query: 418 GVQKYIQATDLSEASHEAVEEKLR 489
           G  K ++  D  + S EA++EKL+
Sbjct: 114 GGAKCLEIQDRFDLSFEALKEKLK 137


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
 Frame = +1

Query: 67  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 213
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 214 FLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSF 393
            LE L      E RY L+D  +  +     +      L  + WC D A +KK+M+ +++ 
Sbjct: 64  MLEKLSDS---EPRYILYDLNFPRK-----DGRAFHHLVYIFWCSDNAPIKKRMVSAATN 115

Query: 394 DALKKSLVGVQKYIQATDLSEASHEAVEEK 483
           + LK   V V+K  Q  D ++ +++ + +K
Sbjct: 116 ELLKTKFV-VKKVFQINDRADLNYDDIADK 144


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
 Frame = +1

Query: 67  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 225
           SG+ V D      + +K  K H+Y +F I DE  + V     ++V     E ++  F + 
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63

Query: 226 LQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALK 405
           ++K    E RY L+D ++  +     E      L  +SWC D A ++KKM  +S+ D ++
Sbjct: 64  VEKLSDREPRYILYDMKFPRK----EEKRIFNNLVFISWCSDKAPIEKKMKLASTQDYVR 119

Query: 406 KSLVGVQKYIQATDLSEASHEAVEEKLRAT 495
           K        + A D  +  ++ +  K   T
Sbjct: 120 KKFSEATTSVNANDFDDLDYDEIAAKAEKT 149


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +1

Query: 283 HQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 456
           H+ Q    A      FL   C D A +KKKML  S+++ LKK   G++KY +A+++ E
Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_36002| Best HMM Match : Peptidase_A17 (HMM E-Value=9.3e-41)
          Length = 193

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 172 DVETVGERNAEYEQFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 318
           D E  GER   +  +L+DL++        C YG+   E T+   G  +ASKK
Sbjct: 83  DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 134


>SB_20964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 172 DVETVGERNAEYEQFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 318
           D E  GER   +  +L+DL++        C YG+   E T+   G  +ASKK
Sbjct: 139 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 190


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 172 DVETVGERNAEYEQFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 318
           D E  GER   +  +L+DL++        C YG  + E T+   G  +ASKK
Sbjct: 422 DEELTGERKKRWLSWLDDLKRVKEVRIARCVYGGSEAEVTYSLHGFGDASKK 473


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 344 HHDIRKSFCFLLASDVPWHWCVYSKSNRPYLHSPVP-PFCRS 222
           H  + + +C+   S V   +C +S  +RPY HSPV  P+C S
Sbjct: 130 HSPVDRPYCY---SPVDHPYC-HSPVDRPYCHSPVDRPYCHS 167



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 341 HDIRKSFCFLLASDVPWHWCVYSKSNRPYLHSPVP-PFCRS--SRNCSYSALRSP 186
           H   + +C    S V   +C YS  +RPY HSPV  P+C S   R   YS +  P
Sbjct: 95  HSWSRPYCH---SPVDRPYC-YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145


>SB_12736| Best HMM Match : Peptidase_A17 (HMM E-Value=3.1e-11)
          Length = 597

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 160 EKQIDVETVGERNAEYEQFLEDLQKGGT---GECRYGLFDFEYTHQCQGTSEASKK 318
           E ++     GER   +  +L+DL++        C YG+   E T+   G  +ASKK
Sbjct: 222 EVRLGRRLTGERKKRWLSWLDDLKRVKEVRIARCVYGVSGAEVTYSLHGFGDASKK 277


>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
          Length = 341

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/84 (19%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +1

Query: 172 DVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPD 351
           +VET  E++ + E+ +++ ++ G  E +  L  FE TH+   T     ++         +
Sbjct: 151 EVETTTEQDKQPEEVVKNSEEEGNHEDQEPLLSFEDTHEDPETKPVEGEEPALYQKVTEE 210

Query: 352 -TAKVKKKMLYSSSFDALKKSLVG 420
            +A+++++       +A++++++G
Sbjct: 211 PSAEIEQEKKDDEEDNAMEEAILG 234


>SB_46360| Best HMM Match : EGF (HMM E-Value=0)
          Length = 352

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 352 CPGTTTSGRASVS-C*PPTCPGTGACIQSQTGHICI 248
           CP   T     VS C    C   G+C+ +Q+G+ C+
Sbjct: 189 CPTGVTGRHCDVSICDSKPCRNNGSCVLTQSGYQCL 224


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 352  CPGTTTSGRASVS-C*PPTCPGTGACIQSQTGHICI 248
            CP   T     VS C    C   G+C+ +Q+G+ C+
Sbjct: 1002 CPTGVTGRHCDVSICDSKPCRNNGSCVLTQSGYQCL 1037


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 26.2 bits (55), Expect(2) = 5.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 477 REAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 587
           R+AP HR+P    +     E+ PA +H+    T  R+
Sbjct: 425 RQAPGHRTPDRHTHNNHAPESYPAAQHTPEHLTNTRN 461



 Score = 20.6 bits (41), Expect(2) = 5.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 318 TEALPDVVVPGHR 356
           TE  PD   PGHR
Sbjct: 419 TEYYPDRQAPGHR 431


>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1690

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 394 DALKKSLVGVQKYIQATDLSEASHEAVEEKLRATDRQ*TAFTHELATK 537
           D LKK +  +QK     +L +AS E  EEK +  +   + F H++A K
Sbjct: 403 DGLKKRMEQIQK-----ELQQASSELEEEKKKTENLLSSIFPHDVANK 445


>SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)
          Length = 643

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 TPNTNSSSRICRRAVPGNADMAC 265
           +P T  SSR C   VPG+AD  C
Sbjct: 14  SPRTGRSSRSCSIPVPGHADHHC 36


>SB_55226| Best HMM Match : Cofilin_ADF (HMM E-Value=4.7e-14)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/119 (22%), Positives = 49/119 (41%)
 Frame = +1

Query: 121 DKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGT 300
           D ++ + VF   +   I +   G+   EY++FL +  +            + Y     G 
Sbjct: 20  DSENTWAVFTYDESNTICLHKSGK---EYDEFLAEFDESDRA--------YAYVRIETG- 67

Query: 301 SEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASHEAVE 477
            E S++ K   ++W   +    KK   S+    +K+ L      IQA D SE  ++ V+
Sbjct: 68  DELSRRAKFAFITWVGPSVSPLKKAKVSTDKAFVKQVLQNFAVEIQADDKSELQYDHVK 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,621,824
Number of Sequences: 59808
Number of extensions: 382230
Number of successful extensions: 1334
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)