Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0093
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)                   54   1e-07
SB_20909| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_11536| Best HMM Match : 3H (HMM E-Value=6)                          40   0.002
SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)             30   1.4  
SB_52448| Best HMM Match : X (HMM E-Value=1.7)                         30   1.9  
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)              29   2.5  
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          28   7.6  

>SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)
          Length = 389

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +2

Query: 176 DYEVIIIDDGSPDGTSEVARQLQKLYGSSKI 268
           DYE+IIIDDGSPDGT E A+QL+ +YG  KI
Sbjct: 240 DYEIIIIDDGSPDGTQEAAKQLEDIYGKDKI 270


>SB_20909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/27 (81%), Positives = 26/27 (96%)
 Frame = +2

Query: 572 LYKKEVLEKLILSCVSKGYVFQMEMII 652
           LYKK+VL+KL+ SCVSKGYVFQMEMI+
Sbjct: 2   LYKKDVLQKLVDSCVSKGYVFQMEMIV 28


>SB_11536| Best HMM Match : 3H (HMM E-Value=6)
          Length = 171

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
 Frame = +2

Query: 89  SILLPTYNERENLPIIIWLIIKYLDESLVDYEVIIIDDGSPDGTSEVARQLQKLYGSSKI 268
           +I LP YNE   +  ++  I+  ++      E+ ++DD + +     A+Q+++L  +   
Sbjct: 57  TIQLPVYNELYVMERLLNNIVN-IEYPKDKLEIQVLDDSTDESVISTAKQIERLQKTGID 115

Query: 269 VLR-PREMKLGLGTAYI-HGIQQASGNFIIIMDAD 367
           +    RE ++G     +  G+++A G FI I DAD
Sbjct: 116 IKHIQRENRIGFKAGALKEGLEKAKGEFIAIFDAD 150


>SB_6552| Best HMM Match : Glyco_transf_9 (HMM E-Value=1.9)
          Length = 930

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 277 TSRDEAWTRNCLHSWDTASFWKF 345
           T RD AW +  L SW+  SFW +
Sbjct: 589 TRRDLAWCQQFLESWNGVSFWLY 611


>SB_52448| Best HMM Match : X (HMM E-Value=1.7)
          Length = 549

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 277 TSRDEAWTRNCLHSWDTASFWKF 345
           T RD AW +  L SW+  SFW +
Sbjct: 471 TRRDLAWWQQFLESWNGVSFWLY 493


>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
          Length = 773

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 277 TSRDEAWTRNCLHSWDTASFWKF 345
           T  D AW +  L SW++ SFW +
Sbjct: 212 TRHDMAWWQQFLESWNSVSFWLY 234


>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 490 TLEVPAVDSTTPLVTSTR 437
           TLE P +D+TTP+ T+TR
Sbjct: 429 TLEDPPIDTTTPIDTTTR 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,201
Number of Sequences: 59808
Number of extensions: 373889
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)