Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0091
(633 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6) 32 0.45
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 31 1.0
SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86) 28 7.2
SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14) 28 7.2
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 28 7.2
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 28 7.2
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 27 9.6
SB_4074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_1145| Best HMM Match : AalphaY_MDB (HMM E-Value=2.7) 27 9.6
SB_48871| Best HMM Match : WD40 (HMM E-Value=0.0073) 27 9.6
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2) 27 9.6
>SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)
Length = 642
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 452 NPGDVLGQSLHERYTSIRVSLLMHVHRFTYRYCSADVDYLQT 327
N G ++GQ++ T R S HV RY A VDY+ T
Sbjct: 60 NMGSIMGQAVQSNVTEERGSPPEHVVSLCMRYAEARVDYMGT 101
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 572 PGHLKYCPVTSFGIVEERFRDARVVFPLDDRL 477
P H+ + P S+ ++ +R +VFPL DRL
Sbjct: 529 PSHIVFTPHRSYLLLTDRLYHLHIVFPLTDRL 560
>SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 306 DTESPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPR 160
D E+PR PR+ + R L + SGT+R G P +PR PR
Sbjct: 312 DPENPREPREPSETQRTLGDPENLRKPREPSGTQRTLGD--PENPREPR 358
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Frame = +2
Query: 455 PGNAGSTAGDRPGEIRRGHH-GNVLQRCRS--------WLRGSTSSALDLDVHHRN-DAS 604
PG ST G PGEI HH N +R +S + G+T+SA VHH + D
Sbjct: 836 PGFMESTLGTTPGEIHHHHHFKNTGRRSKSSPEIPVSPTVLGTTASAPVSPVHHHHYDGL 895
Query: 605 VGSHRR 622
G R
Sbjct: 896 PGERSR 901
>SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 291 RSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVR 145
R P + R+ + GS CA+V + AR TH +P T + V+
Sbjct: 164 REPINDIACNGRVLVSAGSDNCARVWDIKEARCTHVLDTPHTDSVRCVQ 212
>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
Length = 809
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 462 TPALQQAIVQGKYDAGITET---FFNDAEAGYGA 554
T LQQ I++ KYD G++ T ND E G G+
Sbjct: 92 TAKLQQQILKRKYDQGLSNTVNILNNDKENGQGS 125
>SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
Length = 439
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -3
Query: 463 VARETLVMFSAKAFTKDTP---VFEFLCSCMSTVLLIDTVALTSTIFRPLASSLGGYGVT 293
+A + V S FT P + + C+S+ LLI + A T + R AS + G+G
Sbjct: 253 IALISTVTMSLGVFTPLIPLKIILTLIVICISSPLLIMSAAYTVIMIRSRASHINGHGAR 312
Query: 292 Q 290
+
Sbjct: 313 E 313
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -1
Query: 321 PVRSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRD 142
PVRS SP PQ +R S R +SG+ + T PR R+ RD
Sbjct: 432 PVRSWSRS--HSPSLSPQRSRSYSRSRSRSFSKSISGSPTPKYTRTTVKPRHTDREPRRD 489
Query: 141 TS*LSEQ 121
S +E+
Sbjct: 490 FSRSAER 496
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 258 DALLEAGHEVTWVTPYPPSELAKGLKIVDVSATVSISK-----TVDMHEQRNSNTGVSFV 422
D +++A V W+ E+ K +D T ++K TVD++E++N +
Sbjct: 681 DPVMDA-EAVDWIEKVLGEEMVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQVNDMM 739
Query: 423 KALAENITRVSLATPALQQ 479
K L + RVS AT +Q+
Sbjct: 740 KRLIRHHRRVS-ATRQVQR 757
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -1
Query: 315 RSEDTESPR-SPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRDT 139
R+ SPR SPR P+ S R S ++ S + + + PTS R RK+ R +
Sbjct: 327 RATPRASPRASPRASPRDQSSHSSPRNSRNSSRKSSPKPSPRSSRPTSSRKLSRKSSRKS 386
Query: 138 S 136
S
Sbjct: 387 S 387
>SB_4074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -2
Query: 368 TYRYCSADVDYLQTFGQFARRIRSHPGHLVTSLK 267
+Y YC + + R+ PGHLV +L+
Sbjct: 133 SYPYCRIASRFASRIASYPYRVAEEPGHLVVTLR 166
>SB_1145| Best HMM Match : AalphaY_MDB (HMM E-Value=2.7)
Length = 229
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -2
Query: 368 TYRYCSADVDYLQTFGQFARRIRSHPGHLVTSLK 267
+Y YC + + R+ PGHLV +L+
Sbjct: 110 SYPYCRIASRFASRIASYPYRVAEEPGHLVVTLR 143
>SB_48871| Best HMM Match : WD40 (HMM E-Value=0.0073)
Length = 614
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -2
Query: 368 TYRYCSADVDYLQTFGQFARRIRSHPGHLVTSLK 267
+Y YC + + R+ PGHLV +L+
Sbjct: 472 SYPYCRIASRFASRIASYPYRVAEEPGHLVVTLR 505
>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
Length = 186
Score = 27.5 bits (58), Expect = 9.6
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Frame = +3
Query: 276 GHEVTWVTPYPPS----ELAKGLKIVDVSATVSISKTVDMHEQRNSNTGVSFVKAL--AE 437
G ++W P S E + L I +A I + N+ ++FV+ A+
Sbjct: 4 GAHLSWEAPSNASGNVTEYSVYLAIRSQAAGHDIKDVAALSNPPNAPVQLAFVRVYCGAQ 63
Query: 438 NITRVSLATPALQQAIVQGKYDAGITETFFNDAEAGYGAVLQVPWI 575
VSLAT LQ A + A I + GYG QV W+
Sbjct: 64 PTCTVSLAT--LQSAHIDYSTKAAIIFRIAAKNDKGYGPATQVRWL 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,768,241
Number of Sequences: 59808
Number of extensions: 432287
Number of successful extensions: 1616
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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