Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0090
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6443| Best HMM Match : TSP_C (HMM E-Value=0) 233 8e-62
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 183 2e-46
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44) 111 4e-25
SB_2871| Best HMM Match : TSP_C (HMM E-Value=8e-11) 111 6e-25
SB_41756| Best HMM Match : TSP_3 (HMM E-Value=0.32) 54 9e-08
SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39) 38 0.011
SB_48020| Best HMM Match : GATA (HMM E-Value=2.6) 33 0.33
SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_39053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 30 1.7
SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052) 30 1.7
SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26) 29 4.0
SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15) 29 4.0
SB_35036| Best HMM Match : ASC (HMM E-Value=7.8e-12) 29 5.3
SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1) 28 7.0
SB_6172| Best HMM Match : Neurokinin_B (HMM E-Value=1.6) 28 7.0
>SB_6443| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 521
Score = 233 bits (571), Expect = 8e-62
Identities = 96/215 (44%), Positives = 145/215 (67%)
Frame = +3
Query: 18 RTDFRQFTTVRLDPEGESQQEPNWRVTDNGAEILQTLNSDPGLAVGFDSFGGVDYEGTIF 197
+T+FR+ T+ LD + ++ P W V G + QT + DP +AVG + F GVD+ GT++
Sbjct: 289 KTNFRRLQTLVLDNNNDRRKWPEWHVDQKGTAVRQTKDCDPSIAVGHERFRGVDFNGTMY 348
Query: 198 VNTKIDDDYVGFIFGYQSNKRFYVVMWKKDKQTYWQKTPFRAVAENGIQLKLVNSKTGPG 377
V+T+ DDD++G +F +Q K FYV+ WK+ + +W PFRA A GIQ+K V S GP
Sbjct: 349 VDTRYDDDFIGLVFSFQDAKHFYVISWKQAGRVFWSAKPFRATAIAGIQIKAVKSSEGPS 408
Query: 378 KILRNALWNTNSTPDQVTLLWKDPRNVGWREQTAYRWKLLHRPKIGLIRLKMYENNRLVA 557
++RNA+W++ +TP++V ++WK + GW+ T Y ++L HRP IGLIRL+++E+N +
Sbjct: 409 PMMRNAMWHSGNTPNEVKMIWKAAIDQGWKPFTKYHFQLKHRPSIGLIRLRVFEDNSMFI 468
Query: 558 DSGNTYDFTLKGGRLGVFCFSQEMIIWSNLLYKCN 662
D+GN +D T GGRLG++ FSQ I+W NL Y CN
Sbjct: 469 DTGNLWDTTHAGGRLGMYTFSQPEIVWDNLSYLCN 503
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 183 bits (445), Expect = 2e-46
Identities = 80/193 (41%), Positives = 121/193 (62%), Gaps = 1/193 (0%)
Frame = +3
Query: 105 GAEILQTLNSD-PGLAVGFDSFGGVDYEGTIFVNTKIDDDYVGFIFGYQSNKRFYVVMWK 281
G ++ NS P + +G +G VD+ GT++V DY+G +FGYQ+N++FYVVMW+
Sbjct: 2312 GIDVEHVSNSSRPAMLIGETRYGPVDFSGTLYVKGSSGTDYIGVVFGYQTNQKFYVVMWR 2371
Query: 282 KDKQTYWQKTPFRAVAENGIQLKLVNSKTGPGKILRNALWNTNSTPDQVTLLWKDPRNVG 461
K+ + V G+QLKLV+S GPG L A+W++ D+ L+W+DP+ G
Sbjct: 2372 KENINFAAANI--NVGIKGVQLKLVDSNVGPGLELAQAIWHSTDKTDKTKLVWQDPKMAG 2429
Query: 462 WREQTAYRWKLLHRPKIGLIRLKMYENNRLVADSGNTYDFTLKGGRLGVFCFSQEMIIWS 641
W+ +T Y++ + HRP IGLIR+++++ ++ DSG+ YD T+ GGRLG+F F QE +IWS
Sbjct: 2430 WKHETPYQFHIKHRPSIGLIRIRVFQGETVLTDSGDLYDTTITGGRLGMFVFGQEDVIWS 2489
Query: 642 NLLYKCNDKIPAS 680
L KC D S
Sbjct: 2490 RLEAKCADSFTIS 2502
>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
Length = 749
Score = 111 bits (268), Expect = 4e-25
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Frame = +3
Query: 18 RTDFRQFTTVRLDPEGESQQEPNWRVTDNGAEILQTLNSDPGLAVGFDSFGGVDYEGTIF 197
+TDFR+F V LD EG SQ P W + D+G E++Q N +PGL + + F + Y GT F
Sbjct: 593 KTDFRRFEEVLLDDEGNSQPPPKWVIRDSGREVVQLRNGNPGLLLTYPRFDHLVYTGTFF 652
Query: 198 VNTKIDDDYVGFIFGYQSNKRFYVVMWKKDKQTYWQKTPF---RAVAENGIQLKLVNSKT 368
++ +DDD+ G +FGYQSN+ FY+V WK+ QTY T R+ GI L +V T
Sbjct: 653 ISDSLDDDFAGIVFGYQSNRNFYLVSWKQKTQTYNLPTNASYPRSCGRQGISL-MVTQST 711
Query: 369 GP 374
P
Sbjct: 712 RP 713
>SB_2871| Best HMM Match : TSP_C (HMM E-Value=8e-11)
Length = 326
Score = 111 bits (267), Expect = 6e-25
Identities = 49/93 (52%), Positives = 61/93 (65%)
Frame = +3
Query: 174 VDYEGTIFVNTKIDDDYVGFIFGYQSNKRFYVVMWKKDKQTYWQKTPFRAVAENGIQLKL 353
V+Y+GT+FVNT DDD +GF FGYQ F++V WKK +Q YW PFRA AE I LK
Sbjct: 75 VEYKGTMFVNTNHDDDIIGFAFGYQDYSTFFLVSWKKKEQVYWDVKPFRATAETHITLKK 134
Query: 354 VNSKTGPGKILRNALWNTNSTPDQVTLLWKDPR 452
+ S TGP K LRNALW++ T Q +DP+
Sbjct: 135 IKSTTGPSKALRNALWHSGDTTQQDPKRSQDPK 167
>SB_41756| Best HMM Match : TSP_3 (HMM E-Value=0.32)
Length = 110
Score = 54.4 bits (125), Expect = 9e-08
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3
Query: 3 NSQIFRTDFRQFTTVRLDPEGESQQEPNWRVTDNGAEILQTLNSDPGLAV 152
N +I +TDF Q+ ++LDP Q +P WR + G E+ Q LNS+ GL V
Sbjct: 60 NPKIHKTDFSQYKNIKLDPLSTKQDQPQWRASQRGDEVFQILNSNVGLLV 109
>SB_12801| Best HMM Match : TSP_3 (HMM E-Value=2.3e-39)
Length = 252
Score = 37.5 bits (83), Expect = 0.011
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 3 NSQIFRTDFRQFTTVRLDPEGESQQEPNWRVT 98
N +I +TDF Q+ ++LDP Q +P WR +
Sbjct: 219 NPKIHKTDFSQYKNIKLDPLSTKQDQPQWRAS 250
>SB_48020| Best HMM Match : GATA (HMM E-Value=2.6)
Length = 173
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 440 ERPSQRGLARADGLPLEAPPPPQDRSHQTEDVREQPPGR 556
E P +G A ADGL + A PPQ HQ E + E+ P R
Sbjct: 95 EIPRHQGHAIADGLEVVAVEPPQ--HHQLEVIEEEVPSR 131
>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 473 DGLPLEAPPPPQDRS-HQTEDVREQPP 550
D LP PPPP+D S H ED+ PP
Sbjct: 207 DDLPPPPPPPPEDDSIHNHEDLPPPPP 233
>SB_39053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 498 HRPKIGLIRLKMYENNRLVA--DSGNTYDFTLKGGRLGVFCFSQEMIIWS 641
H KI I + +Y N R+ + + G + +TLK R + CF E I+S
Sbjct: 6 HYAKINFIVISLYNNMRMQSYHEEGKSRTYTLKPERRVLECFCNEKWIYS 55
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 25 TSDSSPQSDWTLKASLNRSPTGG*RTTELRSCRP*TRTLVWRSDSTASAESTTRGPSSST 204
T+ + PQ+ T+ +++ P S +P T + V + ST +S+ GP++ST
Sbjct: 52 TTSTRPQTTTTVGSTILTQPQTSSAICHTTSTQPHTSSAVGHTTSTKPQKSSPIGPTTST 111
Query: 205 Q 207
Q
Sbjct: 112 Q 112
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 25 TSDSSPQSDWTLKASLNRSPTGG*RTTELRSCRP*TRTLVWRSDSTASAESTTRGPSSST 204
T+ + PQ+ T+ + + P S +P T + + + ST S+ GP++ST
Sbjct: 108 TTSTQPQTSSTVGHTTSTQPQTSSTVGHTTSTKPQTSSPIGHTTSTKPQTSSPIGPTTST 167
Query: 205 QR*TT 219
Q T+
Sbjct: 168 QHQTS 172
>SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)
Length = 532
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 506 QDRSHQTEDVREQPPGRGLWEHLRL-HPEGGETWSVLLLPGNDHM 637
Q R HQT V PP + L H+ L P +T+ V L P H+
Sbjct: 196 QPRKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLTPPRKHL 240
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 500 PPQDRSHQTEDVREQPPGRGLWEHLRL-HPEGGETWSVLLLPGNDHM 637
PP R HQT V PP + L H+ L P +T+ V L P H+
Sbjct: 170 PP--RKHQTYHVTLTPPRKHLTYHVTLTQPRKHQTYHVTLTPPRKHL 214
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 500 PPQDRSHQTEDVREQPPGRGLWEHLRL-HPEGGETWSVLLLPGNDHM 637
PP R HQT V PP + L H+ L P +T+ V L P H+
Sbjct: 222 PP--RKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLTPPRKHL 266
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 500 PPQDRSHQTEDVREQPPGRGLWEHLRL-HPEGGETWSVLLLPGNDHM 637
PP R HQT V PP + L H+ L P +T+ V L P H+
Sbjct: 248 PP--RKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLTPPRKHL 292
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 500 PPQDRSHQTEDVREQPPGRGLWEHLRLHPEG-GETWSVLLLPGNDH 634
PP R HQT V PP + L H+ L P + + V L P + H
Sbjct: 352 PP--RKHQTYHVMLTPPRKHLTYHVTLTPPSKNQNYQVTLTPPHKH 395
>SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26)
Length = 688
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 626 FLGEAEHSKSPPLQGEVVSVPRVRDQAVVLVHLQSDETDLGAVEELPAVGRLLA 465
F+GE S S + ++ + P RDQ+ + +L S+ + VEE R ++
Sbjct: 426 FVGEIMQSNSSSAKTQIRTTPGKRDQSAAIRYLTSNSKEGTTVEECDGTKRRMS 479
>SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)
Length = 802
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +3
Query: 135 DPGLAVGFDSFGGVDYEGTIFVNTKIDDDYVGFIFGYQSNKRFYVVMWKKDKQTYWQK 308
DP + ++ F DY DY G+ FGY+ R Y V D YW K
Sbjct: 560 DPTEPMIYNLFRSSDYVAFYDYIGIPSSDY-GYWFGYKRQSRMYPVYHTTDDTFYWMK 616
>SB_35036| Best HMM Match : ASC (HMM E-Value=7.8e-12)
Length = 420
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 162 SFGGVDYEGTIFVNTKIDDDYVG 230
+F GVD+ T+ +NT++D++ +G
Sbjct: 133 TFSGVDFGLTVLLNTRVDENTIG 155
>SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 60 EGESQQEPNWRVTDNGAEILQTLNSDPGLAVGFDSFGG--VDYEGTIFVNTKIDDDYV 227
EG+ ++ + D A I + +S PGLA+ FD GG + N +I D ++
Sbjct: 535 EGQGERMKEVMLKDLHANIKEEYHSAPGLAMLFDRSGGKLTPKMSEVIANAEIKDVHI 592
>SB_12043| Best HMM Match : RVT_1 (HMM E-Value=3.1)
Length = 602
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 250 LWYPKINPT*SSSIFVLTKMVPS*STPPKLSNPTARPGSEFRVCR 116
LW K PT +I + +P + P L NPT + ++ CR
Sbjct: 120 LWDQKKVPTLEDAILQAVETIPGSAVVPALENPTTKIRNQACSCR 164
>SB_6172| Best HMM Match : Neurokinin_B (HMM E-Value=1.6)
Length = 460
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 60 EGESQQEPNWRVTDNGAEILQTLNSDPGLAVGFDSFGG--VDYEGTIFVNTKIDDDYV 227
EG+ ++ + D A I + +S PGLA+ FD GG + N +I D ++
Sbjct: 397 EGQGERMKEVMLKDLHANIKEEYHSAPGLAMLFDRSGGKLTPKMSEVIANAEIKDVHI 454
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,052,440
Number of Sequences: 59808
Number of extensions: 562063
Number of successful extensions: 1750
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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