Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0087
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31177| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)                   29   3.5  
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)               28   8.1  
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   28   8.1  
SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_31177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 153 KINKWDGAAAKNAVDDAIRE 212
           K++KWDG A KNA+DDA ++
Sbjct: 38  KVDKWDGNAVKNALDDAAKK 57


>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +3

Query: 552 TREASVTKSFANFIDVNGT--VVQNIVSNEITKLYHSLSS 665
           T  AS  K+  + +D++GT    Q ++ + +TK+YHSL++
Sbjct: 222 TNFASNAKAIRDEVDISGTDEQTQALLKSALTKMYHSLTN 261


>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +3

Query: 552 TREASVTKSFANFIDVNGT--VVQNIVSNEITKLYHSLSS 665
           T  AS  K+  + +D++GT    Q ++ + +TK+YHSL++
Sbjct: 477 TNFASNAKAIRDEVDISGTDEQTQALLKSALTKMYHSLTN 516


>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
          Length = 487

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 471 VWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNI 623
           + +  + +++   +YN V+ + DTN N R  ++T    + +D+   VV  I
Sbjct: 68  IGKGGTNIRRLRTEYNAVVNVPDTNSNERVLTITAPRQSALDILAEVVPKI 118


>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +3

Query: 480 ASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEI 638
           AS+++  HD + +++      +G+TR+         F+D N +++Q +V  +I
Sbjct: 161 ASAHLDWHDKRCSMIF-----DGSTRQGEAIAVILRFLDENWSIIQRLVKIDI 208


>SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)
          Length = 454

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 548 AIRVSHNNYEIVFIVVFLYIRTGFPDPGVISNLLLGYHKDALLF*CS 408
           +++ +++N +I+F+      +T   D G+I+N  + Y K  L F CS
Sbjct: 349 SLKNTYSNVKIIFLPKNTTSKTQPLDSGIIANWKIHYKKRMLRFICS 395


>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 410

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 548 AIRVSHNNYEIVFIVVFLYIRTGFPDPGVISNLLLGYHKDALLF*CS 408
           +++ +++N +I+F+      +T   D G+I+N  + Y K  L F CS
Sbjct: 124 SLKNTYSNIKIIFLPKNTASKTQPLDSGIIANWKIHYKKRMLRFICS 170


>SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 504 DDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEI 638
           DD    V    D  G+TR+  V      F+D N +++Q +V  +I
Sbjct: 204 DDVKVAVAQELDGPGSTRQGEVIAVILRFLDENWSIIQRLVKMDI 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,422,602
Number of Sequences: 59808
Number of extensions: 419164
Number of successful extensions: 907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)