Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0084
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   3e-08
SB_57411| Best HMM Match : SRP14 (HMM E-Value=9.3)                     31   0.43 
SB_12255| Best HMM Match : Pkinase (HMM E-Value=0)                     31   0.43 
SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)                   29   1.8  
SB_6295| Best HMM Match : WSC (HMM E-Value=3.8e-10)                    28   2.3  
SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.1  
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_38354| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)            26   9.3  
SB_53638| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_24821| Best HMM Match : SAP (HMM E-Value=0.031)                     26   9.3  
SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.3  

>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = +3

Query: 288 KDGSKVTTVVATPGQGPDRPQEVSYADMKLIGN 386
           KDGSK+TTVVAT G  PDR QE+SY D K+IGN
Sbjct: 7   KDGSKITTVVATTGSLPDRTQEISYTDTKVIGN 39


>SB_57411| Best HMM Match : SRP14 (HMM E-Value=9.3)
          Length = 200

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 225 PDKRDTRIKNVLPVFYLKNIGKDGSKVTTVVATPGQGPD 341
           P+KR+T +   +   +++ +G++G+ ++ V  T G GPD
Sbjct: 129 PNKRNTTVNTTILAPHVQMLGEEGACISYVRLTQGIGPD 167


>SB_12255| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 476

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 225 PDKRDTRIKNVLPVFYLKNIGKDGSKVTTVVATPGQGPD 341
           P+KR+T +   +   +++ +G++G+ ++ V  T G GPD
Sbjct: 405 PNKRNTTVNTTILAPHVQMLGEEGACISYVRLTQGIGPD 443


>SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)
          Length = 576

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 191 QHRLFYFFSDSHISQRNNIHIRCFHKNRLV 102
           +HRL+ ++++ H      +H  CF  +R V
Sbjct: 117 KHRLYLYYAEGHYDYLTKVHRICFENHRKV 146


>SB_6295| Best HMM Match : WSC (HMM E-Value=3.8e-10)
          Length = 281

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 110 CFCENNEYGCYFFVICDCLKKSKIND-AATSGNLHSECRSG*KGH*NKKCPSCILSEKYR 286
           C  +  + G  FF + D  +    ND     G   S C  G +G+ N KC   +++  YR
Sbjct: 53  CLAKCLQLGYMFFGLQDTTECRCDNDYGGVYGLADSSCSYGCQGNSNLKCGGSMINSVYR 112

Query: 287 QG 292
            G
Sbjct: 113 VG 114


>SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 184 VYFTFFQT--VTYHKEITSIFVVFTKTDWFIEEHHRF 80
           +Y   F+   V + KE+ S+  + +K D  I+E H F
Sbjct: 358 IYLAIFKAEPVNFPKEVRSLKYISSKVDQLIQEQHIF 394


>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 197 TSQHRLFYFFSDSHISQRNNIHIRCFHKNRLVHRRTSPIL 78
           T QH+ ++  + S +   NNI+     +++ +H  T+P L
Sbjct: 52  TQQHQHYHHPTTSTLPSPNNIYTTITQQHQQIHHPTTPAL 91


>SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 269 KYRKDIFYSSV-PFIRIGIHCVSSPTSQHRLFYFFSDSHISQRNNIHIRCFHK 114
           K+RK  F   V P+I + ++ V      H   + F+   + ++N++  + FH+
Sbjct: 298 KFRKATFDEDVIPYIHVLVYHVPQFLEIHGTIHQFNCQTVEKKNHMQNKTFHR 350


>SB_38354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 269 KYRKDIFYSSVPFIRIGIHCVSSPTSQHRLFYFFSDSHISQRN 141
           K  +D+F  S  F+R    C  + T++ R+ Y  S   + QR+
Sbjct: 7   KVFRDLFLESYSFLRDRSSCPVTRTAKERVHYCCSSVLVEQRH 49


>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
          Length = 296

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 243 RIKNVLPVFYLKNIGKDGSKVTTVVATPGQGPDRPQEV 356
           R+  V P    ++  +   K  TVV TPG+ P+ P++V
Sbjct: 253 RVVEVFPTDNTEDPPRVFPKPPTVVLTPGKRPEIPEDV 290


>SB_53638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 302 GDDCGSDAGAG 334
           GDDCG D GAG
Sbjct: 56  GDDCGDDGGAG 66


>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 158 DCLKKSKINDAATSGNLHSECRSG*KGH*NKKCPSCILSEKYRQGR 295
           +C+KK+K   AATS   + +C    KG   +K     L +K  + R
Sbjct: 680 NCMKKAKEIKAATSAGENFDCNVDVKGEEERKVSLQELKDKELKAR 725


>SB_24821| Best HMM Match : SAP (HMM E-Value=0.031)
          Length = 173

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 269 KYRKDIFYSSV-PFIRIGIHCVSSPTSQHRLFYFFSDSHISQRNNIHIRCFHK 114
           K+RK  F   V P+I + ++ V      H   + F+   + ++N++  + FH+
Sbjct: 107 KFRKATFDEDVIPYIHVLVYHVPQFLEIHGTIHQFNCQTVEKKNHMQNKTFHR 159


>SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 258 LPVFYLKNIGKDGSKVTTVVATPGQGPD 341
           LP+    +I +  SKV TVVA  G G +
Sbjct: 352 LPIMSRSSIARPTSKVETVVAASGSGKE 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,938,956
Number of Sequences: 59808
Number of extensions: 236887
Number of successful extensions: 617
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)