Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0083
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.5  
SB_18459| Best HMM Match : Toxin_18 (HMM E-Value=2.1)                  27   4.6  
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               27   8.1  
SB_20632| Best HMM Match : Cu_bind_like (HMM E-Value=0.51)             27   8.1  

>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 192 KRSATMLVCMFLMALVVAATSIAGGVLLYRQYVRI 296
           K +  ML+C F   L++    I GG L Y    +I
Sbjct: 77  KENKCMLICFFAFLLLLLILEIVGGALAYNNKDKI 111


>SB_18459| Best HMM Match : Toxin_18 (HMM E-Value=2.1)
          Length = 150

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 330 WYS---NPGIVVRCRFSRTDGTRARHLQCWSRPPLTP*GTYTLA 208
           WYS   NP  + RCR  R D  R++H++ +S P     GTY+ A
Sbjct: 46  WYSLHSNPTTLHRCRILRED-WRSQHIRQYS-PHRLDGGTYSAA 87


>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 119 LRLVSVETGLRENGHDKIIIKHTLIHYD 36
           +R +  E GL E+GHD   +K  + +YD
Sbjct: 249 VRRLGQEKGLGESGHDNKAVKFIMCNYD 276


>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 212  SVYVPHGVSGGRDQHCRWRA 271
            S Y P  +S  +D HC W+A
Sbjct: 1010 SCYCPDCLSSPKDSHCAWKA 1029


>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 212 SVYVPHGVSGGRDQHCRWRA 271
           S Y P  +S  +D HC W+A
Sbjct: 566 SCYCPDCLSSPKDSHCAWKA 585


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 212 SVYVPHGVSGGRDQHCRWRA 271
           S Y P  +S  +D HC W+A
Sbjct: 269 SCYCPDCLSSPKDSHCAWKA 288


>SB_20632| Best HMM Match : Cu_bind_like (HMM E-Value=0.51)
          Length = 388

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 212 SVYVPHGVSGGRDQHCRWRA 271
           S Y P  +S  +D HC W+A
Sbjct: 272 SCYCPDCLSSPKDSHCAWKA 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,093,892
Number of Sequences: 59808
Number of extensions: 262811
Number of successful extensions: 605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)