Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0081
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 5e-18
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 87 1e-17
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 74 9e-14
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 60 1e-09
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 41 0.001
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 29 2.5
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 29 4.4
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 29 4.4
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 5.8
SB_58408| Best HMM Match : Methyltransf_2 (HMM E-Value=3.7e-12) 28 7.7
SB_25506| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05) 28 7.7
SB_20937| Best HMM Match : hATC (HMM E-Value=0.04) 28 7.7
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 88.2 bits (209), Expect = 5e-18
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +2
Query: 110 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 289
+CY+ + + R + LP D+DP L CTH++Y +A I P T K+ + N DR
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWN--DDRL-- 454
Query: 290 NYRAITSLKAKYPGLTVLLSVGGDADTEEP-EKYNLLLESQQARTVFINSGVLLAEQYGF 466
Y+ I LK K P L LL+VGG P ++ ++ S+ RT FI+S + L+++Y F
Sbjct: 455 -YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDF 513
Query: 467 DGIDLAWQFP 496
DG DL W++P
Sbjct: 514 DGFDLDWEYP 523
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 87.0 bits (206), Expect = 1e-17
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Frame = +2
Query: 113 CYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN 292
CYY + S R P D+DP L CTH+L+ +A + T+KL EN H+
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77
Query: 293 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDG 472
Y+ I +LK P L ++VGG E+ ++ ++ +++ R +FI S + +GFDG
Sbjct: 78 YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHGFDG 137
Query: 473 IDLAWQFPRVK---PKKIRSTWGSLWHGIKKTF 562
+DL W++P ++ PK + + L +++ F
Sbjct: 138 LDLDWEYPGMRGGSPKSDKGRFTLLCRELREAF 170
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/141 (28%), Positives = 72/141 (51%)
Frame = +2
Query: 110 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 289
+CYY + S R P D+DP L CTH+++ ++ + T+ + +N D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-----DFD 461
Query: 290 NYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFD 469
Y+ I +LK P L ++VGG E+ ++ ++ +++ R +FI S + GFD
Sbjct: 462 LYKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFD 521
Query: 470 GIDLAWQFPRVKPKKIRSTWG 532
G+DL W++P ++ +S G
Sbjct: 522 GLDLDWEYPGMRGGSPKSDKG 542
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 74.1 bits (174), Expect = 9e-14
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Frame = +2
Query: 110 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGI-QPDTYKLVSLNENLDIDRTH 286
+CY+ + S R+ +A+ P D+ PA CTHL+Y +A I Q + + N+ D+ +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75
Query: 287 DNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGF 466
+ A LK K P L LL+VGG ++ ++++ R VFI+S + + +GF
Sbjct: 76 PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGF 132
Query: 467 DGIDLAWQFPRVK 505
DG+DL W++P +
Sbjct: 133 DGLDLDWEYPATR 145
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 62.5 bits (145), Expect = 3e-10
Identities = 39/129 (30%), Positives = 66/129 (51%)
Frame = +2
Query: 110 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHD 289
+CYY + + R A+ P ++DP+L CTH++Y +A + D KL N D
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN---DAAM- 77
Query: 290 NYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFD 469
Y+ + LK+ + LL+VGG P + ++ + R +FI+ +L + FD
Sbjct: 78 -YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFD 133
Query: 470 GIDLAWQFP 496
G+DL W++P
Sbjct: 134 GLDLDWEYP 142
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 185 LSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDN--YRAITSLKAKYPGLTVLLSVGG 358
+ T LL G+A + + L + +D+ Y+ LK K PGL LL+VGG
Sbjct: 149 MQLLTLLLLGFASFAAASNYVHRCRHTLAMFEWNDDKLYKEFNDLKLKNPGLKTLLAVGG 208
Query: 359 DADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFP 496
++ ++ + +R VFI+S + + Q+ FDG DL W++P
Sbjct: 209 WNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDGFDLDWEYP 254
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 293 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDG 472
Y+ + LK+ + LL+VGG P + ++ + R +FI+ +L + FDG
Sbjct: 2 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58
Query: 473 IDLAWQFP 496
+DL W++P
Sbjct: 59 LDLDWEYP 66
>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 290 CRVFGLCPGSRLRTPAYRCQAGYRHSRTASGCRTTERDRGPTAAC 156
CR+FG + L YR Q Y+H+R C T E+ R C
Sbjct: 483 CRLFGAIFDNSLGKTRYRSQ--YKHTRRRHPCSTCEQYRSRNRNC 525
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 471 PSKPYCSANSTPELMKTVRACC--DSSRRLYFSGSSVSASPPTDN 343
P P C A S+ E + ++R D RR+ F G V PP N
Sbjct: 384 PDIPICVAASSSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 428
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 471 PSKPYCSANSTPELMKTVRACC--DSSRRLYFSGSSVSASPPTDN 343
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 471 PSKPYCSANSTPELMKTVRACC--DSSRRLYFSGSSVSASPPTDN 343
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 471 PSKPYCSANSTPELMKTVRACC--DSSRRLYFSGSSVSASPPTDN 343
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWISDDRGRRVDFKGKPVRLCPPPAN 227
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 287 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 394
DNY + + YP T V+LS GDA T +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150
>SB_58408| Best HMM Match : Methyltransf_2 (HMM E-Value=3.7e-12)
Length = 440
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = -2
Query: 615 AVKPSRCSDSFSSTGVVPNVFLIPCQSDPQVERIFLGLTLGNCQARSI------PSKPYC 454
A K R S+ F + N + Q PQ+ I L G C ++++ Y
Sbjct: 224 AKKMPRVSNGFHEKSIAKNSTQVKDQGVPQIPEIITNLMFGFCGSQTLFTAWGTGDLAYA 283
Query: 453 SANSTPELMKTV 418
++N+ P++ TV
Sbjct: 284 ASNAYPDMAITV 295
>SB_25506| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
Length = 325
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -1
Query: 637 LFQFTNKGSETFTVLRFLLID---WRGAECLLNSMPKRSPGRADLLRLNSWELPGEVNS 470
LF F + S +++ L+I +R C+++ KRS +L L SW LPG +NS
Sbjct: 111 LFAFMVETSTWVSLVTLLVISVERFRAVSCVIHLTEKRSV--LIILLLVSWVLPGLLNS 167
>SB_20937| Best HMM Match : hATC (HMM E-Value=0.04)
Length = 606
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 497 RVKPKKIRSTWGSLWHGIKKTFGTTPVDEKESEHREGFTALVRE-LKQALIHKP 655
RV P+ + W SLW K F H E F R+ L AL+H P
Sbjct: 323 RVMPRYNSTRWWSLWECAKVVFEEWGHVPAFLAHDEEFAKASRQKLSDALLHNP 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,331,449
Number of Sequences: 59808
Number of extensions: 460742
Number of successful extensions: 1341
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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