Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0078
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)              118   4e-27
SB_31479| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.60028e...    29   5.2  
SB_17455| Best HMM Match : Ank (HMM E-Value=2.2)                       29   5.2  
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)                      28   9.1  
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            28   9.1  
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 1841

 Score =  118 bits (285), Expect = 4e-27
 Identities = 52/81 (64%), Positives = 63/81 (77%)
 Frame = +3

Query: 42  GLFPRRRMLLLTTGPRLFYVDPANMILKGEIPWSPELRVEAKNFRIFLVHTPNRTYYLED 221
           GLF RRR L+LT GPRL+YVDP +M LKGEIPW+ +LR EAKNF+IF VHTP+RTYYLED
Sbjct: 1   GLFARRRQLILTEGPRLYYVDPVDMDLKGEIPWTKDLRPEAKNFKIFFVHTPHRTYYLED 60

Query: 222 PDSYALEWERVIDEVRIETYG 284
              +A+EW + I EV    +G
Sbjct: 61  AKGHAVEWVKKIQEVHESYFG 81


>SB_31479| Best HMM Match : Peptidase_M13_N (HMM
           E-Value=1.60028e-42)
          Length = 627

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/91 (20%), Positives = 46/91 (50%)
 Frame = -3

Query: 650 NVNRNQSINIHSDSSLEHVVASLNRIRCTKRAARASHLALWNKCGAARGSRRAVQRMLRS 471
           ++ RN+++NI   ++LE+  ++ ++     + ARA +  +      ARG++  +  + R 
Sbjct: 241 SIVRNRNLNILK-TALENAPSNYSKNEAVMKTARAYNSCIDISSMDARGTKPLIDLIKRY 299

Query: 470 GGRTDRTYYYRMLAMLEAKATISYMCTLNEW 378
           GG +    Y   + +L+   T++    +N +
Sbjct: 300 GGWSITGNYNSSMDLLQRIGTVARDLNVNSF 330


>SB_17455| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 487

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 120 LKGEIPWSPELRVEAKNFRIFLVHTPNRTYYLEDPDSYALEWERVIDEVRIETYGRD 290
           ++G +  S  LR + K+    +V  P +   LED  S AL W+R  D  + E +  D
Sbjct: 318 IRGIVKRSSILRYKGKSIENNVVAKPGQHSQLEDQLSLALVWDRA-DIAKTEIFTED 373


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 300  MPALPQTRAEPATLPRPSG 356
            +PA P+  A+PAT P+P+G
Sbjct: 1728 LPAPPKVSAKPATAPKPAG 1746


>SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 244 GNVSSTKCVLKHMGATRLKCRRCRRPEQSLRRCRGPRA 357
           G+ S+T C+L+H    ++KC    RP + LR  +   A
Sbjct: 79  GSGSNTSCILRHDTRRKIKC-NADRPFRPLRSSKNSNA 115


>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 295 LKCRRCRRPEQSLRR-CRGPRAPRFITAPHSLSVHI*EIVALASSMANIR**YVRSVRPP 471
           L  R  R P +S +R  R P   +    P S S+ + E   L  +++       R+ RPP
Sbjct: 392 LSQRTARPPPRSNQRTARPPPRSKSENRPSSSSLAVREPPVLLLALSQ------RTARPP 445

Query: 472 DRSIRCTARREPRA 513
            RS + TAR  PR+
Sbjct: 446 PRSNQRTARPPPRS 459


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 470 GGRTDRTYYYRMLAMLEAKATISYMC 393
           GGRT  TY+ +  A L  K  IS+ C
Sbjct: 472 GGRTANTYWQKQKATLLCKTAISHPC 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,365,908
Number of Sequences: 59808
Number of extensions: 500882
Number of successful extensions: 1247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)