Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0075
(363 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 39 0.001
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.004
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.023
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 31 0.21
SB_35034| Best HMM Match : ENTH (HMM E-Value=0) 31 0.21
SB_54868| Best HMM Match : Rhabdo_NV (HMM E-Value=1.1) 31 0.37
SB_7949| Best HMM Match : Na_Ca_ex (HMM E-Value=3.4) 30 0.65
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07) 30 0.65
SB_46895| Best HMM Match : rve (HMM E-Value=1.6e-25) 28 2.0
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16) 28 2.0
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11) 28 2.0
SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62) 28 2.6
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09) 27 3.4
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_43821| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 27 6.0
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3) 27 6.0
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8) 26 8.0
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 26 8.0
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 39.1 bits (87), Expect = 0.001
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = -1
Query: 258 SVTVGTAAEA-IASDSIATGQTAKTST-GATRDSEVTGAGSGTATESLSITAGRTSGAFV 85
+ T TAA A A+ + ATG T T+T AT + VT A + TAT + + TA TS A V
Sbjct: 139 ATTTATAATATAAATATATGTTTATATVTATATATVTAAATATATATATATATTTSTATV 198
Query: 84 VA 79
A
Sbjct: 199 TA 200
Score = 34.3 bits (75), Expect = 0.030
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T + + + SV TAA A + + AT T T+ AT + T G+ TAT +
Sbjct: 107 TAATATAAAAATAAASVAA-TAAAAATAAATATATTTATAATATAAATATATGTTTATAT 165
Query: 123 LSITAGRTSGAFVVA 79
++ TA T A A
Sbjct: 166 VTATATATVTAAATA 180
Score = 33.1 bits (72), Expect = 0.069
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T + + + + TAA + + AT TA + AT T + TAT +
Sbjct: 112 TAAAAATAAASVAATAAAAATAAATATATTTATAATATAAATATATGTTTATATVTATAT 171
Query: 123 LSITAGRTSGAFVVA 79
++TA T+ A A
Sbjct: 172 ATVTAAATATATATA 186
Score = 32.7 bits (71), Expect = 0.092
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -1
Query: 258 SVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFVVA 79
+ TAA ++A+ + A A T+T T + T + TAT + + TA T A A
Sbjct: 113 AAAAATAAASVAATAAAAATAAATATATTTATAATATAAATATATGTTTATATVTATATA 172
Query: 78 EI 73
+
Sbjct: 173 TV 174
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -1
Query: 258 SVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFVVA 79
+ T A A+ ++ TA + AT + T + TAT ++++TA T+ V A
Sbjct: 159 TTTATATVTATATATVTAAATATATATATATATTTSTATVTATATVTVTA--TAATTVTA 216
Query: 78 EI 73
+
Sbjct: 217 TV 218
Score = 26.6 bits (56), Expect = 6.0
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTST-GATRDSEVTGAGSGTATE 127
T + +V V + TAA + AT T T T AT + VT + TAT
Sbjct: 199 TATATVTVTATAATTVTATVTAATTVTVTVTATAATTVTVTVTATVTATVTATVTVTATT 258
Query: 126 SLSITAGRT 100
++++TA T
Sbjct: 259 TVTVTATAT 267
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/75 (21%), Positives = 31/75 (41%)
Frame = -1
Query: 297 SVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLS 118
+ + G + ++ T A A+ + TA +T +T T + TAT + +
Sbjct: 154 ATATGTTTATATVTATATATVTAAATATATATATATATTTSTATVTATATVTVTATAATT 213
Query: 117 ITAGRTSGAFVVAEI 73
+TA T+ V +
Sbjct: 214 VTATVTAATTVTVTV 228
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 37.1 bits (82), Expect = 0.004
Identities = 25/77 (32%), Positives = 39/77 (50%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T++V+V V + TV TA + + AT T T+T AT + T + TAT +
Sbjct: 300 TLAVTVTVTETAAAATATV-TATVTTTTTATATATTTATAT-ATTTATATATATATATAT 357
Query: 123 LSITAGRTSGAFVVAEI 73
++TA T+ A V A +
Sbjct: 358 ATVTATATATATVTATV 374
Score = 33.1 bits (72), Expect = 0.069
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
TV+ +V V + + TA + + + AT T+T AT T + TAT +
Sbjct: 668 TVTATVTVTATATATATVTVTATATVTATATATATATATATAAT----TTATATATATVT 723
Query: 123 LSITAGRTSGAFVVAEI 73
++TA ++ A V A +
Sbjct: 724 ATVTAAASATAAVTATV 740
Score = 29.5 bits (63), Expect = 0.85
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSI-ATGQTAKTSTG-ATRDSEVTGAGSGTAT 130
TV+ + + +VT T A A A+ + AT T T+T AT + T + TAT
Sbjct: 306 TVTETAAAATATVTATVTTTTTATATATTTATATATTTATATATATATATATATVTATAT 365
Query: 129 ESLSITAGRTSGAFVVA 79
+ ++TA T V A
Sbjct: 366 ATATVTATVTVTVTVTA 382
Score = 29.5 bits (63), Expect = 0.85
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTG-ATRDSEVTGAGSGTATE 127
T +V+V V+ + T TA + S AT T T AT + VT + TAT
Sbjct: 625 TATVTVTVIVTVKAAAATA-TATVTVTSTVTATATVTATVTATATVTATVTVTATATATA 683
Query: 126 SLSITAGRTSGAFVVA 79
++++TA T A A
Sbjct: 684 TVTVTATATVTATATA 699
Score = 29.1 bits (62), Expect = 1.1
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTG-ATRDSEVTGAGSGTATE 127
TV+V V V + ++VTV A A + AT T T+T AT + T + TAT
Sbjct: 290 TVTVIVTVTATLA-VTVTVTETAAAATATVTATVTTTTTATATATTTATATATTTATATA 348
Query: 126 SLSITAGRTS 97
+ + TA T+
Sbjct: 349 TATATATATA 358
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTST-GATRDSEVTGAGSGTATE 127
T +V+V V + TAA + AT T T T AT + VT + TAT
Sbjct: 222 TATVTVTVTATAATTVTATVTAATTVTVTVTATAATTVTVTVTATVTATVTATVTVTATT 281
Query: 126 SLSITAGRT 100
++++TA T
Sbjct: 282 TVTVTATAT 290
Score = 27.9 bits (59), Expect = 2.6
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
TV+V+V + +VTV A A+ + TA T+ T + VT + TAT +
Sbjct: 246 TVTVTV---TATAATTVTVTVTATVTATVTATVTVTATTTVTVTATATVTVIVTVTATLA 302
Query: 123 LSITAGRTSGA 91
+++T T+ A
Sbjct: 303 VTVTVTETAAA 313
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 34.7 bits (76), Expect = 0.023
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T V+ G + GGL+ GT + S S T T +G T GSGT T
Sbjct: 570 TGGVNTGSGTTTGGLNTGSGTTTGGVNSGSGTTTSGVNTGSGTTTGG--VNTGSGTTTGE 627
Query: 123 LSITAGRTSG 94
++ +G T+G
Sbjct: 628 VNTGSGTTTG 637
Score = 32.3 bits (70), Expect = 0.12
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -1
Query: 276 SEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGA---GSGTATESLSITAG 106
S + G + T G S TG +S G T TG GSGT T L+ +G
Sbjct: 530 SGESGTTSTGGNTGSGTTSSGGNTGSGTTSSGGNTGSGTTTGGVNTGSGTTTGGLNTGSG 589
Query: 105 RTSG 94
T+G
Sbjct: 590 TTTG 593
Score = 31.9 bits (69), Expect = 0.16
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T V+ G + GG++ GT + + S T T +G T GSGT +ES
Sbjct: 603 TSGVNTGSGTTTGGVNTGSGTTTGEVNTGSGTTTGGMNTGSGTTTGG--VNTGSGTTSES 660
Query: 123 LSITAGRT 100
+ T+G T
Sbjct: 661 GTTTSGTT 668
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = -1
Query: 276 SEDGGLSVTVGTAAEA--IASDSIATGQTAKTSTGATRDSEVTGA----GSGTATESLSI 115
S +GG + GT++ S + ++G++ TSTG S T + GSGT + +
Sbjct: 506 SAEGGATGN-GTSSNGGTTGSSTTSSGESGTTSTGGNTGSGTTSSGGNTGSGTTSSGGNT 564
Query: 114 TAGRTSG 94
+G T+G
Sbjct: 565 GSGTTTG 571
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T V+ G + G++ GT + + S T T +G T TG SGT T
Sbjct: 592 TGGVNSGSGTTTSGVNTGSGTTTGGVNTGSGTTTGEVNTGSGTTTGGMNTG--SGTTTGG 649
Query: 123 LSITAGRTS 97
++ +G TS
Sbjct: 650 VNTGSGTTS 658
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 31.5 bits (68), Expect = 0.21
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATES 124
T S + + + G + VT G + DS +T + D EV+ G G ++ S
Sbjct: 819 TTSSNTPYIQDTGSIHVT-GVCQD----DSSSTSDEDSNMFASASDGEVSSDGQGESSTS 873
Query: 123 LSITAGRTSGAFVVAE 76
+ ITAG FV E
Sbjct: 874 MHITAGGEGPLFVSVE 889
>SB_35034| Best HMM Match : ENTH (HMM E-Value=0)
Length = 455
Score = 31.5 bits (68), Expect = 0.21
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 240 AAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLS 118
A+ I SDS+ +GQT S G+ D GA G S S
Sbjct: 154 ASSGIGSDSVRSGQTTLGSGGSLTDMRTAGADGGALPTSRS 194
>SB_54868| Best HMM Match : Rhabdo_NV (HMM E-Value=1.1)
Length = 775
Score = 30.7 bits (66), Expect = 0.37
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 115 YSRQNFRSICSRGNL*WSFFNRCFGRYSYCC 23
Y N R +C + + W+ CFG YCC
Sbjct: 5 YFASNSRMVCHQRQVCWATNADCFGNQCYCC 35
>SB_7949| Best HMM Match : Na_Ca_ex (HMM E-Value=3.4)
Length = 168
Score = 29.9 bits (64), Expect = 0.65
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 258 SVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFVVA 79
+ T A AIA+ + TA + AT + T + TAT + + TA T+ A A
Sbjct: 49 TATATATATAIATATATATATATATATATATATATATATATATATATATATATATATATA 108
Score = 29.5 bits (63), Expect = 0.85
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 261 LSVTVGTA-AEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFV 85
+++ + TA A AIA + TA + AT + T + TAT + + TA T+ A
Sbjct: 21 IAIAIATATATAIAIATATATATATATATATATATATAIATATATATATATATATATATA 80
Query: 84 VA 79
A
Sbjct: 81 TA 82
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 261 LSVTVGTA-AEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFV 85
+++ TA A AIA+ + TA + AT + + TAT + + TA T+ A
Sbjct: 23 IAIATATATAIAIATATATATATATATATATATATAIATATATATATATATATATATATA 82
Query: 84 VA 79
A
Sbjct: 83 TA 84
>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
Length = 585
Score = 29.9 bits (64), Expect = 0.65
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTVGTAAEAIASDSIAT----GQTAKTST---GATRDSEVTGAG 145
TV+ + V SE ++VT GT + ++DS +T A+ ST G T E+T A
Sbjct: 213 TVAPGIAVASE---ITVTRGTTVASESTDSESTIVPVTTVARESTFTPGTTLAPEITVAP 269
Query: 144 SGTATESLSITAGRTSGA 91
T +IT+G T G+
Sbjct: 270 GTTKASERTITSGNTLGS 287
>SB_46895| Best HMM Match : rve (HMM E-Value=1.6e-25)
Length = 329
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 86 TNAPEVLPAVIDSDSVAVPEPAPVTSES 169
T P VLPA SD+VA P+P+T+ S
Sbjct: 290 TTPPAVLPA--KSDNVATATPSPITTRS 315
>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -3
Query: 250 CWYSCRSDCFRFNRYRANGQNLNRGH*RFRSDRSRLRYCDRITIYYSRQNFRSI 89
C+Y CR C+R R ++ H R + RLRY I+Y R+I
Sbjct: 217 CYYHCRRRCYRRRR-----RHFYHHHPRRYHNHRRLRYHHHRPIFYHYHRRRNI 265
>SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)
Length = 824
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 86 TNAPEVLPAVIDSDSVAVPEPAPVTSES 169
T P VLPA SD+VA P+P+T+ S
Sbjct: 785 TTQPAVLPA--KSDNVATAAPSPITTRS 810
>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
Length = 905
Score = 28.3 bits (60), Expect = 2.0
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = -1
Query: 309 FCTVSVSVGVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGA-GSGTA 133
F + S + V S +V +A EA+ S + T+ ++TGA TGA S +A
Sbjct: 215 FASPSATEAVASPSATGAVVSPSAIEAVVSPTATEAATSPSATGAVVSPSATGAVVSPSA 274
Query: 132 TES-LSITAGRTSGAFVVAEIC 70
T + +S +A T E C
Sbjct: 275 TGAVVSPSATETVAQHSATEDC 296
>SB_13016| Best HMM Match : ResIII (HMM E-Value=0.62)
Length = 450
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 231 AIASDSIATG-QTAKTSTGATRDSEVTGAGSGTATESLSIT 112
AI + SI+TG T + +T DS A GT+ + S+T
Sbjct: 395 AIPNASISTGWMTVRVTTNGMSDSRALAAIEGTSADHASVT 435
>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1297
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 264 GLSVTVGTAAEAIASDSIAT--GQTAKTSTGATRDSEVTGAGSGTAT 130
G T GT A + + A+ GQT+ S G + TG GSG T
Sbjct: 11 GTGSTFGTGTTAFGAQNTASPFGQTSAASGGLFGNKTQTGFGSGFGT 57
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -1
Query: 267 GGLSVT-VGTAAEAIASDSIAT--GQTAKTSTGATRDSEVTGAGSGTAT 130
GG S + GT+ ++ S +T G +TGAT+ S G G+G T
Sbjct: 138 GGTSTSGFGTSGSLFSAPSTSTTGGSLFGGTTGATQSSLFGGTGTGATT 186
>SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09)
Length = 682
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 86 TNAPEVLPAVIDSDSVAVPEPAPVTSE 166
T E++P ++D DS+ +P P T +
Sbjct: 594 TQPKEIIPVLVDEDSIFIPVPQQDTQQ 620
>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 237 AEAIASDSIATGQTAKTSTGATRDSEV--TGAGSGTATESLSITAGRTS 97
AEA + + T A T+T AT SE T + TAT + ++TA ++
Sbjct: 334 AEATTTATATTTTAAITTTAATTTSEAAATAEATTTATATTTVTAATST 382
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -1
Query: 285 GVLSEDGGLSVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAG 106
G + D ++ G+A++ AS+ + KT+TG+ + +GSGT + T
Sbjct: 521 GSVGADKDITGLEGSASDDKASNQKSNAIPEKTTTGSVETEVSSDSGSGTKQNQATSTIE 580
Query: 105 RTSGAFV 85
T V
Sbjct: 581 ATPPTIV 587
>SB_43821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 86 TNAPEVLPAVIDSDSVAVPEPAPVTSES 169
T P VLPA SD+VA P+P+T+ S
Sbjct: 126 TIPPAVLPA--KSDNVATAAPSPITTRS 151
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 234 EAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAG 106
EA+ASD + G TA S + S TG G+ + SL G
Sbjct: 679 EAVASDESSCGATAAYSYPSQVKSSATGIGASDPSISLEEMLG 721
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 26.6 bits (56), Expect = 6.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 277 VRRWWTFCYCWYSCRSDCFRFNRY 206
+R + +CYC+Y C C+ + Y
Sbjct: 467 LRYCYCYCYCYYYCYCYCYYYCYY 490
>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
Length = 861
Score = 26.6 bits (56), Expect = 6.0
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = -1
Query: 303 TVSVSVGVLSEDGGLSVTV-GTAAEAIASDSIATGQT--AKTSTGATRDSEVTGAGSGTA 133
T S G+ G + T GT + + + G T ++ +TGA+R + TGA GT
Sbjct: 191 TTGTSRGITEASRGTTGTSRGTTGASRGTTGASRGTTGASRGTTGASRGT--TGASRGTT 248
Query: 132 TESLSIT-AGR-TSGA 91
S IT A R T+GA
Sbjct: 249 GASRGITGASRGTTGA 264
>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 755
Score = 26.2 bits (55), Expect = 8.0
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -1
Query: 258 SVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFV 85
+ T GT EA++S S+ + + ++T AT + TGA + T T + ++ TS A +
Sbjct: 312 TATTGTT-EALSSQSVISNASTTSTTSATTIA-ATGATTPTDTTQATPSSFVTSDASI 367
>SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)
Length = 362
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 92 APEVLPAVIDSDSVAVPEPAPVTSES 169
APEV A +D + V EPA T ES
Sbjct: 71 APEVDDAALDDEDEQVEEPASDTDES 96
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 258 SVTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGT--ATESLSITAGRT 100
+ T A A A+ ++ T TA + AT + VT + T AT ++++TA T
Sbjct: 439 TATATATATATATATVTTTATATVTVIATATATVTVTATATVTATATVTVTATAT 493
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,701,721
Number of Sequences: 59808
Number of extensions: 136635
Number of successful extensions: 562
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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