Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0070
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31397| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_21819| Best HMM Match : Ribosomal_L23eN (HMM E-Value=5)             29   3.6  
SB_4428| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)        28   6.3  
SB_7681| Best HMM Match : Annexin (HMM E-Value=0)                      28   6.3  
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 28   6.3  
SB_54009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   8.3  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)                   27   8.3  

>SB_31397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 326 RESGRVKDAERRKVXXXXXXXXXXXXXXXXXXQDNFHEDPHADLVM---SKKVPKFADSN 496
           RESGR+KDA  RK+                   DNF EDPHA L +     ++P F D+ 
Sbjct: 6   RESGRIKDAATRKILDTATRRRRQKRQLESLENDNFQEDPHAHLTVLQNKMRIPAFKDTM 65

Query: 497 EKPTR 511
           E  +R
Sbjct: 66  EVLSR 70


>SB_21819| Best HMM Match : Ribosomal_L23eN (HMM E-Value=5)
          Length = 80

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 425 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKSKSAEYYKM 547
           D FH DP  +    KK     D  ++  R+K+S +   YK+
Sbjct: 23  DGFHSDPKPEASKGKKNVVAGDKKKRKGRRKESYAIYIYKV 63


>SB_4428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 425 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKSKSAEYYKM 547
           D FH DP  +    KK     D  ++  R+K+S +   YK+
Sbjct: 23  DGFHSDPKPEASKGKKNVVAGDKKKRKGRRKESYAIYIYKV 63


>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
          Length = 228

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 458 VMSKKVPKFADSNEKPTRKKKSKSAE 535
           V+S K PK   +  KPT+ KKSK+AE
Sbjct: 204 VVSTKKPK-KSAGAKPTKSKKSKTAE 228


>SB_7681| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 426

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 425 DNFHEDPHADLVMSKKVPKFADSNEKPTRKKKS 523
           DN  E   AD+ M+ +  +   S E PT +KKS
Sbjct: 228 DNQAETKRADIAMNGEEEQIDSSRESPTHEKKS 260


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 122 KQFLLHLDETLALGRKFILQDLDE 193
           K F  HL++ L+LGR  +++D+ E
Sbjct: 300 KYFRTHLEDALSLGRPLLIEDVGE 323


>SB_54009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 170 TFYQVQEFHPSVVRIVSLPDHIQRGHLSLHSPWFIVLELV 51
           ++Y   + +P  +  +  P HI    L++H  ++++LELV
Sbjct: 225 SWYLFPQIYPGDLLAIDFPTHICLLILTIHFLYYVILELV 264


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 297  IYNPLSCTGMLSWSIKSSTRACRVSTISADMNKCVSSR 184
            +Y    C G+      S  R C V+T +AD  +C S R
Sbjct: 3020 VYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGR 3057


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 122  KQFLLHLDETLALGRKFILQDLDE 193
            K F  HL+++L+LGR  +++D+ E
Sbjct: 4115 KYFRNHLEDSLSLGRPMLIEDVGE 4138


>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
          Length = 133

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 49  VTSSKTMNHGECNERCPR 102
           VT    M H ECN  CPR
Sbjct: 55  VTCPSGMEHSECNSACPR 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,516,364
Number of Sequences: 59808
Number of extensions: 346656
Number of successful extensions: 3944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3941
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)