Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0066
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21620| Best HMM Match : C1_1 (HMM E-Value=4.7)                      31   0.88 
SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)         30   2.0  
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_21620| Best HMM Match : C1_1 (HMM E-Value=4.7)
          Length = 254

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +2

Query: 275 HEIKCNDMIWDHWL*DLWGVRTGRYHHPAYFRREAVMRFGSKGGVAVTASRQKLAG*WYA 454
           H IKC D +W  W  +   +R  R  HPA  +  A     + G V +  S +K  G W  
Sbjct: 116 HLIKCKDAVWKRWTDEY--LRGLRERHPA--KTGAPDTKPTIGEVVIVKSEEKNRGKW-Q 170

Query: 455 ICIIGNAISRK 487
           + I+ + I+ K
Sbjct: 171 LGIVSSLITSK 181


>SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)
          Length = 1354

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = +2

Query: 275  HEIKCNDMIWDHWL*DLWGVRTGRYHHPAYFRREAVMRFGSKGGVAVTASRQKLAG*WYA 454
            H IKC D +W  W  +   +R  R  H A  +  A     + G V +  S +K  G W  
Sbjct: 869  HLIKCKDAVWKRWTDEY--LRGLRERHRA--KAGAPDTKPTIGEVVIVKSEEKNRGKW-Q 923

Query: 455  ICIIGNAISRKAPYKTRIF 511
            + I+ + I+ K     R+F
Sbjct: 924  LGIVSSLITSKDGENHRVF 942


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 425 RQKLAG*WY-AICIIGNAISRKAPYKT 502
           R K    WY  +CI+G+AI  K+ Y+T
Sbjct: 32  RHKARSLWYPGVCILGDAILAKSSYET 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,024,076
Number of Sequences: 59808
Number of extensions: 360294
Number of successful extensions: 531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)