Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0064
         (377 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)                 55   2e-08
SB_20931| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.41 
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.95 
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   28   2.9  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_54638| Best HMM Match : Cache (HMM E-Value=0.0031)                  27   3.8  
SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06)         27   5.1  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         27   5.1  
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)         27   5.1  
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)                27   5.1  
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  26   8.8  
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     26   8.8  

>SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)
          Length = 296

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +2

Query: 128 REPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLR-PTXNRNCKV 304
           R  + D I EL  ELE+   +I +QA EH+ ++EV++T G S  VE FL+     R   V
Sbjct: 116 RTIVIDAINELIIELESSADNIATQALEHIHSNEVIMTAGKSRTVETFLKNAARKRKFSV 175

Query: 305 VVAEGTDVGESHAMARRLSNSGV 373
           +V EG    +   +A+ L+  G+
Sbjct: 176 IVVEGAPFYQGQELAKSLAKVGI 198


>SB_20931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 181 HCLQLGTELCDVISYW 134
           HCLQ   +LCDVIS W
Sbjct: 102 HCLQTSVKLCDVISKW 117


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 234  YSRSGPALWSSGS*GRPXIGTARSSSRKGLTSARVTP 344
            ++R GP     GS G P +G++R +S  GL +   +P
Sbjct: 2005 FTRRGPGSEGGGSTGTPSVGSSRMASDMGLPNISRSP 2041


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 190 GRPHCLQLGTELCDVISYWFPQVLIR*RHD 101
           GR H +  GT+LC+  S   P VLI  RHD
Sbjct: 200 GRNHSIVYGTKLCENNSQHLP-VLITTRHD 228


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 89  ARHSIVPSTDQDLREPIRDHIAELRTELETMRSSITSQAREHVRADEVLL 238
           +R  IV  TD D +    +  +EL +  + M+  ITS   E +  +E+L+
Sbjct: 113 SRRKIVRHTDSDTQTVESESDSELMSSSDLMQQEITSLKAELLATEELLM 162


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +2

Query: 149  IAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTXNRNCKVVVAEGTDV 328
            +  LRT+ +T  S++    RE       LL  G+S+ + R  RP+     +   +  + +
Sbjct: 902  VRSLRTQRQTSDSAVALAYREEQERANNLLVQGSSSTLPRLSRPSSIATTQGSPSHHSSL 961

Query: 329  GESHAM 346
              SH++
Sbjct: 962  ERSHSV 967


>SB_54638| Best HMM Match : Cache (HMM E-Value=0.0031)
          Length = 598

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 215 VRADEVLLTFGASALVERFLRPTXNRNCKVVVAEGTD 325
           V  D + L    +  +  F RPT N+NC   + + TD
Sbjct: 151 VYLDAIGLGMVVTGTLPVFYRPTVNKNCSTALKQSTD 187


>SB_48543| Best HMM Match : Exo_endo_phos (HMM E-Value=7.8e-06)
          Length = 768

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 190 GRPHCLQLGTELCDVISYWFPQVLIR*RHD 101
           GR H +  GT+LC+  S   P VLI  RHD
Sbjct: 185 GRNHSIVHGTKLCENNSQHLP-VLITTRHD 213


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 190 GRPHCLQLGTELCDVISYWFPQVLIR*RHD 101
           GR H +  GT+LC+  S   P VLI  RHD
Sbjct: 235 GRNHSIVHGTKLCENNSQHLP-VLITTRHD 263


>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
          Length = 1285

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 190 GRPHCLQLGTELCDVISYWFPQVLIR*RHD 101
           GR H +  GT+LC+  S   P VLI  RHD
Sbjct: 614 GRNHSIVHGTKLCENNSQHLP-VLITTRHD 642


>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
          Length = 650

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = -2

Query: 226 VRPHVLPGLTRYGRPH---CLQLGTEL-----CDVISYWFPQVLIR*RHDAVPGRSRQ 77
           +R H+   +T+ GR     C Q  TE+      DV+  WF       RHDA P RS Q
Sbjct: 478 LRYHINTHITKRGREERGWCAQGPTEVLNAFQADVLVVWFTMRQFY-RHDAAPSRSFQ 534


>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 190 GRPHCLQLGTELCDVISYWFPQVLIR*RHD 101
           GR H +  GT+LC+  S   P VLI  RHD
Sbjct: 35  GRNHSIINGTKLCENNSQHLP-VLITTRHD 63


>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 161 RTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTXNRNCKVVV 310
           RT   + ++S+   A EH++ +E          VE+ LR   + N KV++
Sbjct: 674 RTPTVSRKTSMKLTAEEHLQLEEERKKMWKKEQVEQKLRARLDSNSKVII 723


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +2

Query: 116  DQDLREPIRDHIAELRTELETMRSSITSQAREHVRADEV 232
            D+DL + ++D   +L  E+E  ++ + S+   ++  +E+
Sbjct: 1489 DEDLAQKLQDLRTQLENEMEKEKAELQSRIETNIYGEEI 1527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,147,971
Number of Sequences: 59808
Number of extensions: 204111
Number of successful extensions: 624
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)