Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0061
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                       50   5e-07
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   2.3  
SB_49512| Best HMM Match : DUF1286 (HMM E-Value=5.9)                   27   7.2  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   27   7.2  
SB_7133| Best HMM Match : DUF1286 (HMM E-Value=5.9)                    27   7.2  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              26   9.5  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +2

Query: 257 YKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETG*GNLYKEK 391
           Y LHK+  GP   A +T E+ L  Y Q+ I+RR+ET   NLYK K
Sbjct: 2   YTLHKITDGPPGKAVMTREEGLTYYRQMQIVRRMETAASNLYKSK 46


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 149  AAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKL 328
            A+  LA  T+++V   VV  N   +   E TF+        LD   AT A     + LK 
Sbjct: 2125 ASPTLAETTVSEVD--VVLHNKAQALSTEETFDFSSGDNTNLDASGATEAQFQKTNPLKR 2182

Query: 329  YEQLTILR 352
             + +T+L+
Sbjct: 2183 LDPVTVLQ 2190


>SB_49512| Best HMM Match : DUF1286 (HMM E-Value=5.9)
          Length = 121

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 240 VASFFVLYFAFVATTG-AVTFVIVFPAKNL 154
           + SFF +  AF+A TG ++ FVI+   K++
Sbjct: 39  LVSFFAIILAFIAVTGNSLVFVIITRYKSM 68


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 163 SRKHNHESDCTGCSDKRKIQHEKR 234
           SRKH H S  +  S +R+ +H+++
Sbjct: 272 SRKHRHRSRSSSLSSRRRSKHKRK 295


>SB_7133| Best HMM Match : DUF1286 (HMM E-Value=5.9)
          Length = 121

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 240 VASFFVLYFAFVATTG-AVTFVIVFPAKNL 154
           + SFF +  AF+A TG ++ FVI+   K++
Sbjct: 39  LVSFFAIILAFIAVTGNSLVFVIITRYKSM 68


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 61  IKCGPSEGSLDKSGF 105
           + CGPS GS++K G+
Sbjct: 605 VVCGPSHGSIEKEGY 619


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,486,285
Number of Sequences: 59808
Number of extensions: 197954
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)