Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0058
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47984| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0) 30 1.8
SB_37524| Best HMM Match : p450 (HMM E-Value=0) 30 2.4
SB_18706| Best HMM Match : Transposase_11 (HMM E-Value=0.44) 29 3.2
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35) 29 4.2
SB_37363| Best HMM Match : TPR_2 (HMM E-Value=0) 29 4.2
SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0) 29 5.6
SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0) 23 7.8
>SB_47984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/40 (72%), Positives = 36/40 (90%)
Frame = +2
Query: 461 DIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESI 580
+ P ++T WVE+ +KKAA+KLEKLDTDLKNYK+NSIKESI
Sbjct: 2 ETPSVETTWVETTSKKAALKLEKLDTDLKNYKSNSIKESI 41
>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 1161
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 566 IKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 694
++++++ ++LG Y GD A KCY + D C +V
Sbjct: 448 LQQNVQPNLEELGLLYAKSGDFNEASKCYEKLLDLCLKNGDVV 490
>SB_37524| Best HMM Match : p450 (HMM E-Value=0)
Length = 362
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +2
Query: 341 LKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVES 496
L A+ Y++ +N ++ LHK++ + + P ++ +++PVL+ E+
Sbjct: 177 LGWAVIYLL--HNPDVQERLHKEIDDVIGRDAFPQLSKRKELPVLEAFTAET 226
>SB_18706| Best HMM Match : Transposase_11 (HMM E-Value=0.44)
Length = 248
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 515 IKLEKLDTDLKNY-KTNSIKESIRRGHDDLGDHYLDCGDLTSALKC 649
I +E L D+ NY K K++++ G D+G Y+ C L + L C
Sbjct: 181 ISVEWLFADIINYFKFLDFKKNLKIGLSDVGKMYMVCALLRNGLTC 226
>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
Length = 1208
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 341 LKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVES 496
L AI+Y++ +N + LHK++ + + P ++ ++IPVL+ E+
Sbjct: 1077 LSWAIAYLL--HNPGVQARLHKEIDQVIGRDVSPKLSQRKNIPVLEAFTAET 1126
>SB_37363| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 936
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 572 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 694
E+++ +LG Y GD A KCY + D C +V
Sbjct: 571 ENVQPNLGELGVLYTKSGDFNEANKCYEKQLDLCLKNGDVV 611
>SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 572 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 694
E+++ +LG Y GD A KCY + D C +V
Sbjct: 622 ENVQPNLGELGVLYTKSGDFNEANKCYEKQLDLCLKNGDVV 662
>SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 1307
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 572 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYC 673
E+++ +LG Y GD A KCY + D C
Sbjct: 614 ENVQPNLAELGGLYTKSGDFNEANKCYEKLLDSC 647
>SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +2
Query: 572 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYC--------TSGKHLVMMCLNVVKVS 724
E+++ + G Y GD A KCY + D C + HL+M+C + V+
Sbjct: 224 ENVQPNLAERGGLYTKSGDFNEANKCYEKLLDSCLKNGDVVGQADTHLMMVCCTCLNVT 282
>SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1106
Score = 23.4 bits (48), Expect(2) = 7.8
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 191 EDNENNETECYVVENPTLDLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMT 370
ED NN + DLE +Y A + ++F + + + ++ AIS V T
Sbjct: 412 EDALNNHQHALNLFQKAGDLEGQVKTYCAMATTHEVIFKYEE----KKKCIRQAISLVAT 467
Query: 371 TYNV 382
NV
Sbjct: 468 LENV 471
Score = 23.0 bits (47), Expect(2) = 7.8
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +2
Query: 467 PVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALK 646
P L ++ S A K + DL N + ++ + H +G +L G+ A++
Sbjct: 473 PNLGVLYTASGDFNEANKYYEKQLDLCLMNGNVVGQA--KAHLIMGILHLSQGNYDKAME 530
Query: 647 CYSRARD 667
C +ARD
Sbjct: 531 CCQQARD 537
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,346,544
Number of Sequences: 59808
Number of extensions: 442693
Number of successful extensions: 1110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -