Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0057
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 1e-35
SB_59641| Best HMM Match : PAE (HMM E-Value=0) 34 0.100
SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6) 31 0.93
SB_50853| Best HMM Match : Clp1 (HMM E-Value=1.2e-14) 30 2.1
SB_29688| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_24818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_20560| Best HMM Match : Steroid_dh (HMM E-Value=1.9e-21) 28 6.5
>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 146 bits (355), Expect = 1e-35
Identities = 65/101 (64%), Positives = 81/101 (80%)
Frame = +2
Query: 323 LPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQ 502
+P + GI+DVW NL EEF IR ++ +Y +VAMDTEFPGVVARPIGEFRSTA+YQ+Q
Sbjct: 1 MPTTVNFGIRDVWQGNLEEEFAKIRNIIDEYPYVAMDTEFPGVVARPIGEFRSTAEYQFQ 60
Query: 503 LLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFQST 625
LLRCNVDLL+IIQLG++F +++G+ P TWQFNFKF T
Sbjct: 61 LLRCNVDLLKIIQLGMSFYNDHGQQPSDGATWQFNFKFNLT 101
Score = 57.6 bits (133), Expect = 9e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +3
Query: 615 FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 710
FNL EDMYAQDSIDLL SG+QF++HEE+GI+
Sbjct: 98 FNLTEDMYAQDSIDLLNRSGIQFKQHEEEGID 129
>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
Length = 1252
Score = 34.3 bits (75), Expect = 0.100
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 578 PPGYTTWQFNFKFQSTRRYVCARLYRPITKL-RSTVQKT*RRWYRA 712
PP +T+ NF QS + C L RPI+ L R V WYR+
Sbjct: 474 PPDWTSQTSNFSTQSAAQEACTSLTRPISALSRPVVWSHGAHWYRS 519
>SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6)
Length = 541
Score = 31.1 bits (67), Expect = 0.93
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 706 IPSSSCFLNCRPEFCNRSIESCAYISSCRLKFKVELPS-CITRWCLSIFI 560
+PS + C FC+R E C+Y+ + L+ V LPS TR C+ F+
Sbjct: 59 LPSHTATTECALTFCHRYEEVCSYLLT-PLRGSVPLPSHTSTRECVFTFL 107
>SB_50853| Best HMM Match : Clp1 (HMM E-Value=1.2e-14)
Length = 351
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 278 PFPNEKNYLFFSTPWFSIYFVYFERTKRQC 189
P PNEK Y S+ I F FER K+ C
Sbjct: 214 PSPNEKLYNMLSSKIADIVFQRFERNKKAC 243
>SB_29688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 278 PFPNEKNYLFFSTPWFSIYFVYFERTKRQC 189
P PNEK Y S+ I F FER K+ C
Sbjct: 47 PSPNEKLYNMLSSKIADIVFQRFERNKKAC 76
>SB_24818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 164 CSGCF--KRPSTGA*FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISLP 328
CS C KRP T +K+ A+K + R+ T +RYK+ A FGS +P
Sbjct: 15 CSYCTSQKRPLTA----YALTSKTSKMAAKHRISRKRIITTERYKVGGAIFGSTQIP 67
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 173 CFKRPSTGA*FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISLPGGSDC 343
C+ PS +N +TT+ + DN + ++ + PS+ S P S C
Sbjct: 886 CYAIPSGRVSLTKNAPKSVQTTSKRPQDNLKNFPSPRKTRTPSSHQSPQSAPPSSPC 942
>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 406 PKVSLGSYGYRISRSSCTTNW 468
P V G YG+++ +SSCT W
Sbjct: 158 PLVGWGIYGFQVPKSSCTVLW 178
>SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Frame = -1
Query: 389 SGILHANCDSKHLLYHNHC---PLEVIWNQNLRTAS--CIVYPFPNEKNYLFFSTPWFS 228
S + CDS YH C P EV N S C PN + LF S+P FS
Sbjct: 104 SNQMGVQCDSCDKWYHVRCMDMPTEVYQGLNNSCTSWICCTCGLPNFSSSLFKSSPMFS 162
>SB_20560| Best HMM Match : Steroid_dh (HMM E-Value=1.9e-21)
Length = 350
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 472 FSNWSCNYSWKFCIHSYPMILLDYLSDYLEFFMQI--VIPNIFYTTITAPW 326
F+ W C+Y + IH + M Y S + + V PN+FY+ + A W
Sbjct: 62 FTFWLCHYVHRGFIHPWVM---KYSSPKTPVGISLAGVFPNLFYSYLNADW 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,676,319
Number of Sequences: 59808
Number of extensions: 493328
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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