Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0055
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 175 3e-44
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 3e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 116 1e-26
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 52 6e-07
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 42 5e-04
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 37 0.014
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 34 0.10
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 34 0.10
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 34 0.13
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 31 1.2
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_26340| Best HMM Match : TP2 (HMM E-Value=4.9) 29 3.8
SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1) 29 5.0
SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16) 29 5.0
SB_28585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14) 29 5.0
SB_33966| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7) 28 8.7
SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 175 bits (426), Expect = 3e-44
Identities = 75/159 (47%), Positives = 114/159 (71%)
Frame = +3
Query: 132 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 311
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 312 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 491
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 492 IVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPAT 608
++ VNKMD ++E RYEEIK +++ ++KK+G+NP T
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNPKT 324
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 3e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +3
Query: 192 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 371
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 34.3 bits (75), Expect = 0.10
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 645 NMLEPSDKMPWFKGWTIDRKD 707
NM+ + +MPWFK WTI+R D
Sbjct: 53 NMITGTSQMPWFKQWTIERVD 73
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 116 bits (280), Expect = 1e-26
Identities = 52/94 (55%), Positives = 68/94 (72%)
Frame = +3
Query: 264 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 443
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 444 TREHALLAFTLGVKQLIVGVNKMDSTEPPYHEAR 545
TREHA+L +LGV QLIV +NK+D YH +
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGK 94
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 194
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/110 (26%), Positives = 52/110 (47%)
Frame = +3
Query: 81 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 260
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 261 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 41.9 bits (94), Expect = 5e-04
Identities = 31/117 (26%), Positives = 51/117 (43%)
Frame = +3
Query: 231 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 410
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 411 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYI 581
QT EH + +K +++ NK+D + + +Y++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 37.1 bits (82), Expect = 0.014
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 221
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 222 VLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 398
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 399 AGTG 410
+G
Sbjct: 132 CVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 36.7 bits (81), Expect = 0.019
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +3
Query: 63 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 230
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 231 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 404
E A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 405 TG 410
G
Sbjct: 231 AG 232
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.025
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 252 RGITI 266
RGIT+
Sbjct: 1987 RGITV 1991
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 306 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 485
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 486 QLIVGVNKMD 515
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 34.3 bits (75), Expect = 0.10
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
Frame = +3
Query: 45 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 218
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 219 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 398
+ + L R G D+ +T++D PGH IK +I G A +I
Sbjct: 88 -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGE 128
Query: 399 AGTGEFEAGISKNGQTR 449
GT E G ++G+ +
Sbjct: 129 CGT--IEGGFGQSGKVK 143
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 34.3 bits (75), Expect = 0.10
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +3
Query: 69 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 221
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 222 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 362
+ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 33.9 bits (74), Expect = 0.13
Identities = 24/87 (27%), Positives = 35/87 (40%)
Frame = +3
Query: 255 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 434
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 435 NGQTREHALLAFTLGVKQLIVGVNKMD 515
QT+E A GV +I +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 531 YHEARYEEIKKEVSSYIKKIGY--NPATVAFVPISGWHGDNMLEPSDKMP 674
YHEAR EI ++S ++GY NPAT F+ H D E SD +P
Sbjct: 694 YHEARDCEILTDISRIAGRVGYSANPATNCFI-----H-DECSECSDTLP 737
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 312 IIDAPGHRDFIKNMITGTSQADCAVLIV 395
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 492 IVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPAT-VAFVPISGWHGDNMLE 656
IV ++ ++ EA+ + K +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1058 IVALSTRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_26340| Best HMM Match : TP2 (HMM E-Value=4.9)
Length = 290
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 103 ESPLLPAISSTSAAALINVQSRSLRKKLKR 192
ESPLLP IS S +L++ +S R+K R
Sbjct: 57 ESPLLPLISEGSFTSLVSSKSNKSRRKKDR 86
>SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1)
Length = 715
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 451 SRVCPF-LLIPASNSPVPAATISTAQSAWEVPVI 353
S +CP ++IP S+ P++T+S S W+ PVI
Sbjct: 9 SSLCPRKVVIPPSSCKRPSSTLSKKGSDWKPPVI 42
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 451 SRVCPF-LLIPASNSPVPAATISTAQSAWEVPVI 353
S +CP ++IP S+ P++T+S S W+ PVI
Sbjct: 417 SSLCPRKVVIPPSSCKRPSSTLSKKGSYWKPPVI 450
>SB_30634| Best HMM Match : Apolipoprotein (HMM E-Value=0.16)
Length = 558
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 451 SRVCPF-LLIPASNSPVPAATISTAQSAWEVPVI 353
S +CP ++IP S+ P++T+S S W+ PVI
Sbjct: 26 SSLCPRKVVIPPSSCKRPSSTLSKKGSDWKPPVI 59
>SB_28585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 146 AAALVDEMAGSSGLSRVHMADDDDVDMSLLFTHLCGSRLR 27
A ALVD + S L R++ A D + LF H+ G+ R
Sbjct: 202 ATALVDGVKISPPLCRIYQACSKDFERDGLFFHISGTNFR 241
>SB_5515| Best HMM Match : PspA_IM30 (HMM E-Value=0.14)
Length = 388
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 451 SRVCPF-LLIPASNSPVPAATISTAQSAWEVPVI 353
S +CP ++IP S+ P++T+S S W+ PVI
Sbjct: 26 SSLCPRKVVIPPSSCKRPSSTLSKKGSDWKPPVI 59
>SB_33966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 451 SRVCPF-LLIPASNSPVPAATISTAQSAWEVPVI 353
S +CP + IP S+ P++T+S S W+ PVI
Sbjct: 9 SSLCPRKVFIPPSSCKRPSSTLSKKGSDWKPPVI 42
>SB_24387| Best HMM Match : XPG_I (HMM E-Value=6.7)
Length = 333
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 164 DCTFINAAALVDEMAGSSGLSRVHMADDDDVDMSLLFTHLCGSR 33
D TF+ D GSSG +R+++ D+D ++ L L +R
Sbjct: 10 DTTFVVGFPAQDPRKGSSGKNRLYITADEDTEVYLEIPDLNDNR 53
>SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 495 VGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLEP 659
+ +++ + E P H + K+ VS+ + + TV F+P GW EP
Sbjct: 117 ISLDRYLAIETPLHYRAFTT-KRRVSAIVAFVWVFSTTVGFIPYMGWRKVRRPEP 170
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,885,783
Number of Sequences: 59808
Number of extensions: 524390
Number of successful extensions: 1485
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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