Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0051
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   4e-23
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)                  29   3.2  
SB_51822| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069)         29   4.2  
SB_10575| Best HMM Match : E-MAP-115 (HMM E-Value=3.2)                 29   4.2  
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_6060| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  

>SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 701

 Score =  105 bits (251), Expect = 4e-23
 Identities = 54/108 (50%), Positives = 70/108 (64%)
 Frame = +2

Query: 302 DNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGTC 481
           D+ + ELDPRIQ ELEKLNAAT+ IN LE ELDE+   F   L   + +L A+  +LG C
Sbjct: 11  DDEEEELDPRIQDELEKLNAATNSINHLEAELDEARAVFRQTLAGATYQLNAVAAKLGKC 70

Query: 482 VDKSRPYYDALGQAVAARSECQKAAVQFQRASELHAAAKETVTLAEQR 625
           V+KSRP+Y++  Q   A    QK+  QF+RAS +H AA+  V  AE R
Sbjct: 71  VEKSRPFYESYRQLKQAHYMLQKSTNQFERASGMHVAARRRVIEAESR 118



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = +2

Query: 347 EKLNAATDEINKLELELDESMKTFHLLLN---ETSRRLQALTRRLGTCVDKSRPYYD 508
           E LN AT E+N+ E    ES K     L+   +   +++ L+++L + V K+RPY++
Sbjct: 134 EMLNQATIEVNEAEKLKHESWKKHQEDLHAYRDLESKVKQLSKKLSSAVGKARPYFE 190


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +2

Query: 347  EKLNAATDEINKLELELDESMKTF---HLLLNETSRRLQALTRRLGTCVDKSRPYYDALG 517
            EKL  + D+I+KLE  L++  K     HL L E   +L+ ++      V++S     +L 
Sbjct: 1224 EKLKESKDKISKLEGTLNDKAKALEKAHLSLKEAETKLEEMSTNNVKAVEESNEKITSLK 1283

Query: 518  QAVAARSEC-QKAAVQFQRASE 580
              +  + +  +K     + A E
Sbjct: 1284 ALINQKDDALEKIKASLKEAEE 1305



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
 Frame = +2

Query: 302  DNGDTELDPRIQVELEK-LNAATDEINKLELEL---DESMKTFHLLLNETSRRLQAL 460
            D  +T+ +P+I VELEK L A+T  ++K   +L   + ++K   L + E ++++  L
Sbjct: 1403 DESETKDEPQIVVELEKQLEASTRALDKKNTQLIARNNTIKRLELNIIEKNKKIDDL 1459


>SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 416 FHLLLNETSRRLQALTRRLGTCVDKSRPYYDALGQAVAARSE 541
           F   L E++  L++   R G  +++SRPYY+AL ++  A  +
Sbjct: 5   FRQTLTESAFVLKSHANRYGKFINQSRPYYEALERSKKAHKK 46


>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
          Length = 440

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/86 (18%), Positives = 39/86 (45%)
 Frame = +2

Query: 347 EKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGTCVDKSRPYYDALGQAV 526
           ++L ++ DE+N   ++LDE ++     +    ++++ + +RL T    S+       Q  
Sbjct: 242 DELKSSQDELNDFVIQLDEEVEGMQSTIMTLQQQIKDIKQRLATETTTSQELRTKCHQVE 301

Query: 527 AARSECQKAAVQFQRASELHAAAKET 604
              SE ++       + +    +K+T
Sbjct: 302 KCLSEAKEQNATLSLSLQQRLESKDT 327


>SB_51822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/89 (21%), Positives = 38/89 (42%)
 Frame = +2

Query: 344 LEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGTCVDKSRPYYDALGQA 523
           ++KL  A +E    +  + E ++      NET+  + +L       + ++R  Y+A    
Sbjct: 195 IKKLYEAQNEFRAADKNISEEIQALRNKDNETNEAIDSLQASFTRAIQETRAGYEA-NDT 253

Query: 524 VAARSECQKAAVQFQRASELHAAAKETVT 610
              +S  +    Q    +EL +A  +T T
Sbjct: 254 TITKSLNELGTKQQNDVTELQSALNDTKT 282


>SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 967

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/89 (21%), Positives = 38/89 (42%)
 Frame = +2

Query: 344 LEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGTCVDKSRPYYDALGQA 523
           ++KL  A +E    +  + E ++      NET+  + +L       + ++R  Y+A    
Sbjct: 286 IKKLYEAQNEFKAADKNISEEIQALRNKDNETNEAIDSLQASFTRAIQETRAGYEA-NDT 344

Query: 524 VAARSECQKAAVQFQRASELHAAAKETVT 610
              +S  +    Q    +EL +A  +T T
Sbjct: 345 TITKSLNELGTKQQNDVTELQSALNDTKT 373


>SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069)
          Length = 246

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = +2

Query: 299 DDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRRLQALTRRLGT 478
           D++ +T LD      LE L+ + DE   LE  LDES++T H  L      L+ L   L  
Sbjct: 66  DESLET-LDESPDESLETLDESLDE--SLET-LDESLETLHESLETLQESLEKLLESLHE 121

Query: 479 CVDKS 493
            +D+S
Sbjct: 122 SLDES 126


>SB_10575| Best HMM Match : E-MAP-115 (HMM E-Value=3.2)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 427 AERDVPPPPGTHEETRHLRR-QVEAVLRCPGTGGCSTLRVSKS 552
           A  D+ PPP  +  TRHL++ + E +++ PG    S  R++KS
Sbjct: 62  ASNDLAPPPPKNPWTRHLKQPEEEGMVQTPGY--VSFKRINKS 102


>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 314 TELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLLNETSRR 448
           + L  R+Q   + L+ A + I K+E ELD S K   + L ET RR
Sbjct: 436 SSLRARVQELEQTLDDADEHIKKIETELDGS-KEQMMFLQETVRR 479


>SB_6060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 346 EFDLDPRVELSIAVVIGWDRERGF 275
           + DLD RV   ++V++GW R + F
Sbjct: 65  DLDLDERVFKRLSVIVGWTRFKSF 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,277
Number of Sequences: 59808
Number of extensions: 349018
Number of successful extensions: 1058
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)