Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0050
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  27   6.8  
SB_21583| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 219 LNYFLSYQYCRSLGLQLA-SFETKEKADSITTYLTN 323
           L+YF+++ YCR +   L    +T E + ++ + +TN
Sbjct: 591 LSYFVAFVYCRKINRSLTMGVDTAEMSGAVVSGITN 626


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 183  YFISRMNPYSPELNYFLSYQYCRSLGLQLASFETKEKADSI 305
            +FI+  NPY    +  +       LG  + S ETKEK   I
Sbjct: 2473 HFIAACNPYRKHTDQMIHKLESAGLGYHVTSQETKEKLGKI 2513


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -3

Query: 402  DRCSSTKTCLCRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRTMPVEDLMICSTD 238
            D C   K    +   P S+  I CN   +  S   +   +   M ++D ++CS D
Sbjct: 954  DACQPDKITCSKDNVPCSKDDITCNKDSIACSRERVACLNDNVMCLKDNVMCSKD 1008


>SB_21583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 381 TCLCRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRTMPVEDLMICST 241
           TCLC     + + H C   H++       P PS  TM + DL+  +T
Sbjct: 191 TCLCSHSNTLPKYHNCIGGHIIG-CFDPYPDPSQFTM-IRDLVTSAT 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,663,876
Number of Sequences: 59808
Number of extensions: 349367
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)