Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0011
(418 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23) 29 1.2
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5) 28 3.6
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 27 4.7
SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2) 27 4.7
SB_4014| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 27 6.2
SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06) 27 8.2
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 27 8.2
SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 30.7 bits (66), Expect = 0.50
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = +1
Query: 172 NNKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFD 351
+N DG S+ N D DDN S N D ND E+ + D D D D
Sbjct: 27 DNDDGDDYSDSDHNDDDDDDDNDSDNNNVDDDNDGNDDDDDSDEDYDDDDNDDNDDDNDD 86
Query: 352 SPQSNGE 372
+ N +
Sbjct: 87 NDDDNDD 93
>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
Length = 1531
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 126 RYYSGPCCQRSADAFEQQRWQYH 194
RY+SGPCC RS + +++ + H
Sbjct: 1498 RYFSGPCCNRSIASKIREKTEVH 1520
>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 157 VPTPSNNKDGSTISELPENWDQTKDDNRSL--FLNKSDKNDLEPYPLALSEEGNQDGYDQ 330
V S+N D S +N D+ ++N + NKS+ ND + N DG+D
Sbjct: 328 VDNNSHNNDEKNKSNSNDNNDENNNNNSNNKDSNNKSNNNDNKSNSNNTENNSNNDGFDN 387
Query: 331 TV 336
++
Sbjct: 388 SI 389
>SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5)
Length = 126
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 178 KDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQRFDSP 357
KDG T + W + N+S+ K +K ++E + + Q Q ++++ D
Sbjct: 50 KDGKTKDGKTKRWKNKRWKNKSMEKQKMEKQEMEKQEMEKQKMEEQKMEKQKMEKQKDGK 109
Query: 358 QSNGE 372
+G+
Sbjct: 110 TKDGK 114
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 265 KNDLEPYPLALSEEGNQDGYDQTVDQRF 348
+ L Y LS + +QDGYDQ + + F
Sbjct: 350 RKKLRGYKTRLSSQNSQDGYDQGMAENF 377
>SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)
Length = 228
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 181 DGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQDGYDQTVDQ 342
D S +SE + DQ DD + KSD++D+ P ++ + DG D +++
Sbjct: 77 DESDVSETDPSKDQYDDDGDDNEIEKSDESDV-PESDPSKDQYDDDGDDNELEK 129
>SB_4014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 151 SAVPTPSNNKDGSTISELPENWDQTKDDNRSLFLNK 258
S PT ++ K + + +N+ T DD S F+ K
Sbjct: 15 STTPTKTSKKQNLKATPMKQNYSNTDDDQASSFVEK 50
>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 136 AVLAVSAVPTPSNNKDGSTISELPENWDQTKDD 234
A A +A PS+ ST+ LP++WD DD
Sbjct: 500 AAAAAAAASEPSSGGPSSTV--LPKHWDPIPDD 530
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 103 TMLLFSLTAITAVLAVSAVPTPSNNKDGSTISELPENWDQTKDDN 237
T L T++ V+A PS DG T L NW + N
Sbjct: 276 TTCLSGFTSLPGPSGVTAFSQPSRWDDGQTNRHLSNNWSPPSEAN 320
>SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)
Length = 587
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 109 LLFSLTAITAVLAVSAVPTPSNNKDGSTISE 201
++ + A + V ++P+PS NKD ++IS+
Sbjct: 305 VILVIALAVAAIHVHSMPSPSQNKDRASISD 335
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 175 NKDGSTISELPENWDQTKDDNRSLFLNKSDKNDLEPYPLALSEEGNQD 318
+++ STI P+ + +++D+R N D P + S+E N++
Sbjct: 640 SRNSSTIESSPKRFSWSQEDSRVQMRNSPAVTDGAPNRFSWSQENNKE 687
>SB_9952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 26.6 bits (56), Expect = 8.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 283 KVPNRFCHSCSRREIGYHLLFD 218
K+P+ C C R+ GY+ D
Sbjct: 446 KIPDFLCKGCENRQYGYYAFLD 467
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,229,271
Number of Sequences: 59808
Number of extensions: 254182
Number of successful extensions: 886
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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