Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0115
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   54   1e-07
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   2.7  
SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            27   8.3  
SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 28/71 (39%), Positives = 43/71 (60%)
 Frame = +1

Query: 151 IAXKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 330
           ++ + +GTVKWFN + GYGFI    + +D+FVH  AI  +      +S+ +G+AV F   
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAIQSD----GFKSLKEGQAVTFVAT 66

Query: 331 AGEKGFEAAGV 363
            G+KG +A  V
Sbjct: 67  RGQKGMQAEEV 77


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +1

Query: 340 KGFEAAGVTGPGGEPVKXSPYAADKRRGYHR 432
           +G EA+ VTGP GEPV+ S YA D+RR  +R
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRRRNNR 43


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 337  EKGFEAAGVTGPGGEPVKXSPYAADKRRGYHRQYFP 444
            EK  E      P  EP+   P  A++R  YHR  FP
Sbjct: 990  EKAAEKLAAATPSEEPLSHHP-VAEQRSAYHRPEFP 1024


>SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 381 ASKXLTLCCRQAPWLPP 431
           AS   T+C RQAPWL P
Sbjct: 19  ASPTWTICLRQAPWLSP 35


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 182 GSTSRVDMVSSTGMTPRKMCLCIRLPSPVTTHVRLCARSATERRWSLPWLP 334
           G++S +  VSST  +P +  +C  L  P    + LC    TE R  +P LP
Sbjct: 440 GTSSSIWDVSSTPRSPTRTPVCYALMIPFGHMLSLC--MDTEGRLRVPLLP 488


>SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 190 VKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGD 303
           VKSGY   +  DTK +V   Q A     P+   R+ GD
Sbjct: 73  VKSGYSVFSGKDTKAEVPSLQAAQHLPEPKGRKRTTGD 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,763,847
Number of Sequences: 59808
Number of extensions: 219505
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)