Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0112
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1927| Best HMM Match : Laminin_A (HMM E-Value=0.00021) 102 3e-22
SB_32981| Best HMM Match : Laminin_A (HMM E-Value=6.6e-25) 95 7e-20
SB_43697| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_37745| Best HMM Match : DUF1610 (HMM E-Value=2.7) 35 0.058
SB_15190| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39) 31 1.2
SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1) 30 2.2
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_9613| Best HMM Match : OAR (HMM E-Value=0.018) 29 2.9
SB_22965| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_9861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31) 28 6.7
SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095) 28 6.7
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18) 28 6.7
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24) 28 6.7
SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31) 28 6.7
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 28 8.8
SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27) 28 8.8
>SB_1927| Best HMM Match : Laminin_A (HMM E-Value=0.00021)
Length = 188
Score = 102 bits (244), Expect = 3e-22
Identities = 42/88 (47%), Positives = 62/88 (70%)
Frame = +1
Query: 16 VRPGLLWVVEQLPGYTEAADITEELKQTSYFPSYNIAYFPSVFNLSGGNERVNTYGDWFG 195
++PG L V+EQ+PG TE AD++ L++ Y+ SYN+ YFP+++N+SG YG WF
Sbjct: 43 IQPGTLSVLEQIPGMTETADMSVYLQENGYWASYNLPYFPTIYNMSGQEASREAYGSWFD 102
Query: 196 YHTNPRAKIFKQKQSEIHNLRDMYRTMR 279
YH NPRA+IFK+ QS++ +L M + MR
Sbjct: 103 YHLNPRAQIFKRDQSKVVDLETMMKLMR 130
Score = 36.7 bits (81), Expect = 0.019
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 439 KITSSLLXKTYQFIAVSSPTYNLSRGVPPFVWSKFDMGPQISHVGHPDVWMFPPLLHRWE 618
+ITS L + +Q IAVS PT++ P F WS + + GHPD + F P+ W+
Sbjct: 132 QITSFELFQKFQCIAVSGPTHDQQ---PAFQWSTSEWEKPL---GHPDKFDFEPVKVSWD 185
>SB_32981| Best HMM Match : Laminin_A (HMM E-Value=6.6e-25)
Length = 432
Score = 94.7 bits (225), Expect = 7e-20
Identities = 43/104 (41%), Positives = 66/104 (63%)
Frame = +1
Query: 1 KMKGSVRPGLLWVVEQLPGYTEAADITEELKQTSYFPSYNIAYFPSVFNLSGGNERVNTY 180
++ +++ LWVVEQ+P + D T L+ Y+PSYN+ ++ V+NLSG + V +
Sbjct: 277 QLNNTIQDNALWVVEQIPTLVASGDQTAILR-AGYWPSYNVPFYELVYNLSGYPDFVARH 335
Query: 181 GDWFGYHTNPRAKIFKQKQSEIHNLRDMYRTMRYNDYRHDPLSR 312
G F + PRAKIF++ QS +H+L M MRYND++HDP S+
Sbjct: 336 GVQFSHELAPRAKIFRRDQSMVHDLDSMKHIMRYNDFQHDPYSQ 379
>SB_43697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 35.1 bits (77), Expect = 0.058
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 410 DIAVTEPPTRRSRARCSXR-LTSS*PCRAPPTTCPGGCHPSFGVSST 547
D AV P T+R R C T S PCR P CP C G S+T
Sbjct: 25 DFAVLPPATKRGRGMCPGEGCTYSYPCRRKPNVCP-QCGVFLGGSAT 70
>SB_37745| Best HMM Match : DUF1610 (HMM E-Value=2.7)
Length = 111
Score = 35.1 bits (77), Expect = 0.058
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 410 DIAVTEPPTRRSRARCSXR-LTSS*PCRAPPTTCPGGCHPSFGVSST 547
D AV P T+R R C T S PCR P CP C G S+T
Sbjct: 23 DFAVLPPATKRGRGMCPGEGCTYSYPCRRKPNVCP-QCGVFLGGSAT 68
>SB_15190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 523 PFVWSKFDMGPQISHVGHPDVWMFPPLL 606
P++WS D GP SH+ P W+F P+L
Sbjct: 4 PYIWSS-DGGPGFSHIQTPKKWLFRPVL 30
>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
Length = 2865
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 103 YFPSYNIAYFPSVFNLSGGNERVNTYGDWFGYH--TNP 210
+FPS + PSVF G R N G FGYH +NP
Sbjct: 1985 FFPSGDKIDVPSVFLKGGSFPRANRNGKIFGYHVISNP 2022
>SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1)
Length = 172
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 131 PPTAAPAATTPPTAAPAATTP 151
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 121 PPTGAPAATTPPTAAPAATTP 141
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPT PA+ +P
Sbjct: 141 PPTAAPAATTPPTGAPAATTP 161
>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 198 PPTAAPAATTPPTAAPAATTP 218
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 188 PPTGAPAATTPPTAAPAATTP 208
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSPS 5
PP P A PPT PAS +P+
Sbjct: 218 PPTGAPAATTPPTGAPASTTPT 239
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPT PA+ +P
Sbjct: 208 PPTAAPAATTPPTGAPAATTP 228
>SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 21 PPTAAPAATTPPTAAPAATTP 41
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 11 PPTGAPAATTPPTAAPAATTP 31
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPT PA+ +P
Sbjct: 31 PPTAAPAATTPPTGAPAATTP 51
>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2409
Score = 29.9 bits (64), Expect = 2.2
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Frame = +2
Query: 437 RRSRARCSXRLTSS*PCRAPPTTCPG-GCHPSFGVSSTWVRR------YLTWATPMCGCS 595
R +R RC R S CRAP T G V S YL +TP C+
Sbjct: 2193 RAARGRC--RCIQS--CRAPTTQHKGISLQQEVAVCSGSAEAVFLSGCYLVHSTPQPVCN 2248
Query: 596 HPCSTAGSGDRLTHSQQQRAA 658
H C+ A G R + QRAA
Sbjct: 2249 HLCAYAQCGKRPPRYRSQRAA 2269
>SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 84 PPTAAPAATTPPTAAPAATTP 104
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 74 PPTGAPAATTPPTAAPAATTP 94
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSPS 5
PP P A PPT PAS +P+
Sbjct: 104 PPTGAPAATTPPTGAPASTTPT 125
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPT PA+ +P
Sbjct: 94 PPTAAPAATTPPTGAPAATTP 114
>SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 74 PPTVAPAATTPPTAAPAATTP 94
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPT PA+ +P
Sbjct: 84 PPTAAPAATTPPTGAPAATTP 104
>SB_9613| Best HMM Match : OAR (HMM E-Value=0.018)
Length = 138
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +3
Query: 414 SQSRSHRREDHELAAXEDLPVHSRVEPHLQLVQGGATLRLE*VRHGSADISRGPPRCVDV 593
+Q +H L + ++L HS + ++ L+ E V+ D++ C D
Sbjct: 64 AQKLEPSEREHALDSEDELRSHSIASLRKRAIEHAQNLQHETVKP-EIDVTMLKRECEDR 122
Query: 594 PTPAPPLGV 620
TP+PPL V
Sbjct: 123 ETPSPPLSV 131
>SB_22965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +3
Query: 414 SQSRSHRREDHELAAXEDLPVHSRVEPHLQLVQGGATLRLE*VRHGSADISRGPPRCVDV 593
+Q +H L + ++L HS + ++ L+ E V+ D++ C D
Sbjct: 237 AQKLEPSEREHALDSEDELRSHSIASLRKRAIEHAQNLQHETVKP-EIDVTMLKRECEDR 295
Query: 594 PTPAPPLGV 620
TP+PPL V
Sbjct: 296 ETPSPPLSV 304
>SB_233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 112 KGNTMFASALQLYRPPLCIPVAAQPPTAGPASQSPSS 2
KG + S + PP P + PP+ P SQSP S
Sbjct: 88 KGESCIFSTKKNQSPPSQSPPSQSPPSQSPPSQSPPS 124
>SB_9861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 544 DMGPQISHVGHPDVWMFPPLLHRWEW 621
D + H PD+W PPL H W
Sbjct: 68 DASAFVVHAREPDIWNLPPLEHLAPW 93
>SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
Length = 147
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -1
Query: 710 FNLERAFNENMYVYSEXKQLVVVDCA*AYPHSQRWSRGGNIHTSGWP-T*DICGPMSNLL 534
F R+ + ++SE K V+C Y HS IH+ P D CG
Sbjct: 70 FRYSRSMKSHQRIHSEEKPYQCVECDKFYKHSWHLKTHLIIHSGQEPYQCDECGKCFRYS 129
Query: 533 QTKGGT 516
+T GT
Sbjct: 130 RTPNGT 135
>SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)
Length = 433
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -1
Query: 698 RAFNENMYVYSEXKQLVVVDCA*AYPHSQRWSRGGNIHTSGWPT*DICGPMSN 540
RA N + Y Y + L++V YP+ + +S + + +G+ +CGP++N
Sbjct: 139 RASNHDCYSYFDNVALIIVY---HYPYYESFSLLHSFYENGFRKIIVCGPVAN 188
>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
Length = 563
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 109 GNTMFASALQLYRPPLCIPVAAQPPTAGPASQSPSS 2
GN +A+ + YRP +C +AA PTA QS +S
Sbjct: 197 GNWSYAAGPRAYRPSMC-QMAAHGPTAFQDPQSQAS 231
>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
Length = 346
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPTA PA+ +P
Sbjct: 296 PPTGSPAATTPPTAAPAATTP 316
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 70 PPLCIPVAAQPPTAGPASQSP 8
PP P A PPT PA+ +P
Sbjct: 306 PPTAAPAATTPPTVAPAATTP 326
>SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
Length = 147
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -1
Query: 710 FNLERAFNENMYVYSEXKQLVVVDCA*AYPHSQRWSRGGNIHTSGWP-T*DICGPMSNLL 534
F R+ + ++SE K V+C Y HS IH+ P D CG
Sbjct: 70 FRYSRSMKSHQRIHSEEKPYQCVECDKFYKHSWHLKTHLIIHSGQEPYQCDECGKCFRYS 129
Query: 533 QTKGGT 516
+T GT
Sbjct: 130 RTPNGT 135
>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 6.7
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Frame = +3
Query: 393 PVQS-LGTSQSRSHRREDHELAAXEDLPVHSRVEP---HLQLVQGGATLRLE*VRHGSAD 560
P+ S +GT S S E ++A + P R+ P + +T +
Sbjct: 292 PISSDIGTKPSSSSNAEIQKVAPPNEAPAKKRIVPTPISSDITVKSSTTTNNNTANSVTQ 351
Query: 561 ISR--GPPRCVDVPTPAPPLGVGIGSRTVNNNE 653
I + GPP+ VPTP+P I S+ NN+
Sbjct: 352 IRQKEGPPKRRIVPTPSP---TDIDSKPCENNK 381
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 121 CCTKGNTMFASALQLYRPPLCIPVAAQPPTAGPASQS 11
CC KG A+A +PP P A A PA+ +
Sbjct: 630 CCNKGKAAAAAAAPT-KPPTAAPTTAAATQAAPAAMT 665
>SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)
Length = 560
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 618 LPAVEQGWEHPHIGVA 571
+ AV+QGWEHP + A
Sbjct: 119 ISAVQQGWEHPRVDAA 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,160,043
Number of Sequences: 59808
Number of extensions: 468199
Number of successful extensions: 1865
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1856
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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