Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0107
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
 Frame = +3

Query: 144 LVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKD 320
           +V+  QG D  + G N SAE+A +  +    +G ++V+ +RLVE   +   K      K 
Sbjct: 39  IVSEKQGIDENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE-IPYKTFKELLAEFKP 97

Query: 321 YMKKLVAKL-EEKAPD-QVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD-----GMVA 479
           Y+KK+   + EE  PD +V+ F+      +  I   FKE QFF     DCD       + 
Sbjct: 98  YIKKVKEHMKEEGCPDEEVKGFEKAAMDYILSIKKNFKEYQFF---QPDCDLGGGAHCIV 154

Query: 480 MMEY--RDFDGTQ----IPIMMFFKHGLEEEK 557
            M Y  +D  G       P++  FKH +++ K
Sbjct: 155 FMWYPEKDLRGVDQDGFSPVLTVFKHAVKQVK 186


>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/86 (27%), Positives = 40/86 (46%)
 Frame = +3

Query: 258 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 437
           H+LVE     +++  ++  +D    LVA        Q  VF+ + N V K   G  K   
Sbjct: 734 HKLVEKRLVSNQQQRSIRFRDQRPHLVA--------QGVVFEPDANDVSK---GTLKVTG 782

Query: 438 FFTGESMDCDGMVAMMEYRDFDGTQI 515
           F  G+++  + +V +  Y DF  +QI
Sbjct: 783 FVRGQTLSANRLVHLAGYGDFQISQI 808


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,603,858
Number of Sequences: 59808
Number of extensions: 389215
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)