Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0091
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         31   0.94 
SB_6407| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     30   1.2  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_20956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -3

Query: 517 AEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRDDIAGKF** 338
           A++ +   A V+E  +E     K+  DL  G+  SQ   + S +T  +Q+   +AG F  
Sbjct: 298 AKNFDELQAKVQEILQEQCTGCKNTLDLVFGIPNSQS--LGSEITNVKQVMSRLAGLFDV 355

Query: 337 CDSKAKV 317
            +SKA +
Sbjct: 356 ANSKAHI 362


>SB_6407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 547 DKQISXAAKLAEDAERTLAAVRESAREATEV--VKHVADLATGLELSQQPKVDSA 389
           DK    A+KLA   +  LAA+  +AR A  +    H   +A  L+ S  PKV SA
Sbjct: 141 DKNPRLASKLAARCDLDLAALFHTARIADRLWSAMHEVAVAAKLDKSMTPKVSSA 195


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 547 DKQISXAAKLAEDAERTLAAVRESAREATEV--VKHVADLATGLELSQQPKVDSA 389
           DK    A+KLA   +  LAA+  +AR A  +    H   +A  L+ S  PKV SA
Sbjct: 446 DKNPRLASKLAARCDLDLAALFHTARIADRLWSAMHEVAVAAKLDKSMTPKVSSA 500


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 465  PPKSSSMWPTWPPDSNSASSRRSTAH*PKRGR*EMTSPVSSDD 337
            PP+SSS  P  PP  N+ +S ++T+  P + + E    VS+ D
Sbjct: 1048 PPQSSSAQPGTPP-QNAKNSTKATSTEPSQSKPEEPPKVSTAD 1089


>SB_20956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +2

Query: 224 ESPVSLEIFFWRITINFVLYQPRRLKEITRYDFRFRVASSELTGDVISYLPRFG*CAVDL 403
           E P + E   W+  +  +    ++L  ITR+D+        L    + YL     C +D+
Sbjct: 23  EDPANTEYTRWQDVLTLIQPTLKKLLPITRFDWLHEFQRPLLKSRPLPYLLNMARCVLDI 82

Query: 404 RLL 412
             L
Sbjct: 83  GFL 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,663
Number of Sequences: 59808
Number of extensions: 277246
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)