Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0090
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         95   3e-20
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 52/92 (56%), Positives = 61/92 (66%)
 Frame = +2

Query: 98  LRVAKVTGGVASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRA 277
           LRVAKVTGG ASKLSKI+VVRK+ ARV  V  Q  + NLR  Y+  KY PL L    TRA
Sbjct: 39  LRVAKVTGGAASKLSKIKVVRKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRA 98

Query: 278 MRKAXTKHEAXIKTRKEIRXKSLFPPRVYAVK 373
           MR++ TK EA  KT K+ +  + F  R YAVK
Sbjct: 99  MRRSLTKKEASSKTLKQQKKLAHFSLRKYAVK 130


>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +2

Query: 128 ASKLSKIRVVRKAXARVYIVYHQKMKVNLRNHYKNXKYKPLXLXAXKTRAMRKAXTK 298
           ASK SK RV R   A++    H  ++  +RN   N K     +   K+RAM+K  T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,000,212
Number of Sequences: 59808
Number of extensions: 98933
Number of successful extensions: 167
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)