Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0089
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 239 2e-63
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 239 2e-63
SB_51702| Best HMM Match : SURF6 (HMM E-Value=4) 32 0.57
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 31 0.76
SB_23233| Best HMM Match : Mucin (HMM E-Value=2.1) 30 1.7
SB_14517| Best HMM Match : p450 (HMM E-Value=5.7e-12) 30 1.7
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 30 2.3
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 29 3.0
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 29 3.0
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18) 29 4.0
SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33) 29 4.0
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.0
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 29 4.0
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 29 5.3
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 28 7.0
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 28 9.3
SB_18905| Best HMM Match : Nop (HMM E-Value=0) 28 9.3
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 239 bits (585), Expect = 2e-63
Identities = 119/159 (74%), Positives = 132/159 (83%), Gaps = 1/159 (0%)
Frame = +2
Query: 119 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 298
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 299 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQG 475
+S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQG
Sbjct: 66 EMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQG 125
Query: 476 LDDLAQRCAQYKKDGCHFAKWRCVLKIGRXTPSYQAIQE 592
LD L +RCAQYKKDGC FAKWRCVLKI TPS A++E
Sbjct: 126 LDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKE 164
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = +3
Query: 570 PRTKLSRKNANVLARYAFICQSQRIVPIVEPEVLPDGEHDLDRAPKV 710
P ++NANVLARYA ICQ +VPIVEPEVL DG+H L+RA KV
Sbjct: 157 PSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERAQKV 203
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 239 bits (585), Expect = 2e-63
Identities = 119/159 (74%), Positives = 132/159 (83%), Gaps = 1/159 (0%)
Frame = +2
Query: 119 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 298
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTSGK 65
Query: 299 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQG 475
+S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQG
Sbjct: 66 EMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQG 125
Query: 476 LDDLAQRCAQYKKDGCHFAKWRCVLKIGRXTPSYQAIQE 592
LD L +RCAQYKKDGC FAKWRCVLKI TPS A++E
Sbjct: 126 LDGLGERCAQYKKDGCDFAKWRCVLKITDYTPSELAMKE 164
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = +3
Query: 570 PRTKLSRKNANVLARYAFICQSQRIVPIVEPEVLPDGEHDLDRAPKV 710
P ++NANVLARYA ICQ +VPIVEPEVL DG+H L+RA KV
Sbjct: 157 PSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERAQKV 203
>SB_51702| Best HMM Match : SURF6 (HMM E-Value=4)
Length = 260
Score = 31.9 bits (69), Expect = 0.57
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Frame = +2
Query: 143 KKIAQAIVAPA-KGILAADESTGTMGKRLQDIGVENT-EENRRRYRQLLFSSDAVLSENI 316
K +A++ +A K E TGT +QD G NT + ++ + + + S VLS +
Sbjct: 92 KHVARSFIAELEKRKQTGKEGTGTDASEMQDSGAVNTCQSDKHVFTKHVAESKVVLSPSS 151
Query: 317 ---SGVILFHE-TLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDD 484
GV++ E + QK D V+ E +G + + G+ L ++E + +
Sbjct: 152 HGKQGVLMMPEYVVGQKPDKQKKKVTRDESQGSVKSQEKTVGITHLQVEQEEVEEEEIST 211
Query: 485 LAQRCAQYKKD 517
+ ++D
Sbjct: 212 TTLTAGENQRD 222
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 31.5 bits (68), Expect = 0.76
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Frame = +1
Query: 364 WNASGLPAGEEGHHPRHQGRQGCRPA------VRIRRRMHHPGSGRPRPALRPVQEGRLP 525
W G+P G P GR G P + RR PG PRP +RP + GR+P
Sbjct: 515 WRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPG---PRPGIRPGRGGRIP 569
Query: 526 LRQVALRAEDRPXHPLVPSYP--GKTLMCSPATPSSVRASASCR-LSSPKSYLMASTT 690
V V P G+ + P + S + R L +PKSY++ T
Sbjct: 570 KPAVVYPLNGITGARDVTRRPNNGRPGVLRPDRGPDRKPSGAKRFLGNPKSYIIFPRT 627
>SB_23233| Best HMM Match : Mucin (HMM E-Value=2.1)
Length = 350
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 442 VRIRRRMHHPGSGRPRPAL-RPVQEGRLPLRQ-VALRAEDRPXHPLVPSYPGKTLMCSPA 615
VR M +P S P P + R + G P R V L EDR P VP+ K S A
Sbjct: 25 VRAAGPMFNPSSRSPTPRVSRARRRGNQPSRTFVWLEDEDRDRPPSVPAVTAKVKFPSDA 84
Query: 616 TPSSV 630
+ S+V
Sbjct: 85 SWSTV 89
>SB_14517| Best HMM Match : p450 (HMM E-Value=5.7e-12)
Length = 403
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +1
Query: 490 PALRPVQEGRLPLRQVALRAEDRPXHPLVPSYPGKTLMCSPATP-----SSVRASASCRL 654
P +Q+ L Q L D+P +PL+ ++ +TL S P +VR + C +
Sbjct: 223 PLQMELQDNLDQLGQEKLSLNDKPRYPLLDAFISETLRTSCIMPFGLPRRTVRETTICGI 282
Query: 655 SSPKSYLMASTTWT 696
+ PK + W+
Sbjct: 283 NIPKDTTVLLNLWS 296
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 314 ISGVILFHETLYQKADDGTPLVSLLEKK 397
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/94 (28%), Positives = 41/94 (43%)
Frame = +2
Query: 104 YFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLL 283
Y Q E ELK+ Q+ + I + +S G GK + E EE RY +
Sbjct: 91 YLQMNDEESLPELKRARQSFITMVTRINNSSQSVGKDGKAKTSLFSE--EEKDTRYLVIA 148
Query: 284 FSSDAVLSENISGVILFHETLYQKADDGTPLVSL 385
FS+D S I+ + +T + + D L+SL
Sbjct: 149 FSNDHFTSAFIAESGITRKT--EDSADWLRLISL 180
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 568 PLVPSYPGKTLMCSPATPSSVRASASCRLSSPKSYLMASTTWT 696
P PSY + SPA PS+ AS S +SP SY AS ++T
Sbjct: 712 PASPSYSPTSPSYSPAIPSNSPASPSYSPASP-SYTPASPSYT 753
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 568 PLVPSYPGKTLMCSPATPSSVRASASCRLSSPKSYLMASTTWTA 699
P +PSY + SP +PS AS S +SP SY AS ++ A
Sbjct: 768 PTIPSYSPTSPSYSPTSPSYSPASPSYTSASP-SYSPASPSYKA 810
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 568 PLVPSYPGKTLMCSPATPSSVRASASCRLSSPKSYLMASTTWT 696
P +PS + SPA+PS AS S +SP SY AS ++T
Sbjct: 726 PAIPSNSPASPSYSPASPSYTPASPSYTPASP-SYTPASPSYT 767
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 29.5 bits (63), Expect = 3.0
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Frame = +1
Query: 337 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIRRRMHHPGSGRPRPALRPV 507
R P G + G P E G P GR + RP R H PG P P
Sbjct: 324 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 383
Query: 508 QEGRLPLRQVALRAEDRPXHPL--VPSYPGK 594
+ GR P RP H L P PG+
Sbjct: 384 EPGRPP------HEPGRPPHELGRPPHEPGR 408
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 29.5 bits (63), Expect = 3.0
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Frame = +1
Query: 337 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIRRRMHHPGSGRPRPALRPV 507
R P G + G P E G P GR + RP R H PG P P
Sbjct: 90 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 149
Query: 508 QEGRLPLRQVALRAEDRPXHPL--VPSYPGK 594
+ GR P RP H L P PG+
Sbjct: 150 EPGRPP------HEPGRPPHELGRPPHEPGR 174
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.5 bits (63), Expect = 3.0
Identities = 30/109 (27%), Positives = 40/109 (36%)
Frame = +1
Query: 382 PAGEEGHHPRHQGRQGCRPAVRIRRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRP 561
P P H+ R+ P R R+R P R R P + R + R D P
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDRKRYDSPPRRRRRSPSPPPRRRRRDSYSPSRRRRDSP 913
Query: 562 XHPLVPSYPGKTLMCSPATPSSVRASASCRLSSPKSYLMASTTWTAPQK 708
PS P + SP +PS R +SP M S+ PQ+
Sbjct: 914 ----TPSPPPRRRRKSP-SPSPPRRRRRSPSNSPPP--MRSSPLPPPQR 955
>SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)
Length = 308
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/63 (34%), Positives = 28/63 (44%)
Frame = +1
Query: 325 DPVPRDPLPEG*RWNASGLPAGEEGHHPRHQGRQGCRPAVRIRRRMHHPGSGRPRPALRP 504
DP+ PLP G SG A E H R Q R + +RR + P + R P+ P
Sbjct: 213 DPILSLPLPRGCVTALSGYAADEITHCVRPQDVVTRRAVIILRRVL--PDAPRLAPSQEP 270
Query: 505 VQE 513
QE
Sbjct: 271 TQE 273
>SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)
Length = 689
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 364 IVSLLVKGLVE-QDHTGDVLGEHSVRAE*ELAITTTVLLC 248
+V+LLV G + QD TG V+G+ SV + + I TTVL C
Sbjct: 425 LVALLVFGQCDRQDETG-VVGDISVVVDTRVIIDTTVLKC 463
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 504 WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 382
WAQ ++ SS PW S + SGT S+L ++ +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 125 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDAVL 304
E+Q+ L K AQ +V+ +KG+ D + + K + +N E++R R + S D
Sbjct: 1006 EIQQGLNKAAQCVVSVSKGVSQWDRTCRALRKAEKRDDSDN-EDSRSRSASNVGSDDESR 1064
Query: 305 SE 310
SE
Sbjct: 1065 SE 1066
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 547 AEDRPXHPLVPSYPGKTLMCSPATPSSVRASASCR--LSSPKSYLMASTTWTAPQ 705
A R PS+P +LM +P TP+S+ S + + SSP + ++ P+
Sbjct: 1367 ANTRSSLTTTPSFPTTSLMLAPVTPASLIISQATKNATSSPTPSIKVTSATAVPR 1421
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 133 GGAQEDRSSNCSSRKGYPGR*RIHRYNG-QAFAGHRRGEHRGEPSS 267
GG+Q + +GYPG R + G QA AG G RG P +
Sbjct: 618 GGSQAEAGGMWGGARGYPGTGRKGGHGGSQAKAGGMWGGARGYPGT 663
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +2
Query: 65 DHTSKAISATMSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVE 244
+H K +T YP P + +K + + P K L A S + R++ ++
Sbjct: 287 EHHRKNYPRLPATIRFYPDPSVAHRYRKQRRPVPVPGKRGLQATPSEELIIARIKRYAID 346
Query: 245 NTEENRRRY 271
+ ++ R +Y
Sbjct: 347 DRQKGRTKY 355
>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
Length = 194
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +2
Query: 104 YFQYPTPELQEELKKIAQAIVAPAKGILAA-----DEST-GTMGKRLQD 232
YF + ++++K A IVA AK LAA EST GT+GKRLQ+
Sbjct: 111 YFSPIVQNMPQDMRKKAARIVA-AKCTLAARVDSFHESTEGTIGKRLQE 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,654,681
Number of Sequences: 59808
Number of extensions: 580091
Number of successful extensions: 1822
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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