Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0086
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            72   4e-13
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)                   43   3e-04
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  

>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
 Frame = +1

Query: 166 EVKD-WPQQ-SLNVGQITAVSINSLGQPVIFHRADRVWDENTFNE-SNAYQNFDKGPIVE 336
           E++D WP   +L++GQ++ V+I+  G   I HRA R WD NTF E ++  +   + P+  
Sbjct: 170 ELQDHWPSDPTLSIGQVSGVAIDLDGNVTILHRAGRPWDGNTFYENTDVLRKELREPLKT 229

Query: 337 DTILVLDPGSGSVLHSWGAYI-FYMPXGLTLDHHDNVWVTDV 459
           + +L L+P S  V+   G+   F +P GL+ D H N+W TDV
Sbjct: 230 NVLLWLNPQSELVMREEGSKAGFVLPHGLSFDQHGNMWATDV 271


>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
          Length = 750

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 400 FYMPXGLTLDHHDNVWVTDV 459
           FYMP GLT+DH DN W+TDV
Sbjct: 150 FYMPHGLTIDHEDNTWITDV 169



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 154 LRPQEVKDWPQQSLN-VGQITAVSINSLGQPVIFHRADRVWD 276
           LR   V++WP      +GQ++AV+++  G  V+FHR  R WD
Sbjct: 106 LRYHLVENWPLLGQETLGQVSAVALDMRGNVVVFHRGSRAWD 147


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = +1

Query: 283  TFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAY-----IFYMPXGLTLDHHDNVW 447
            T N+    +  DK   + D  +  DP     + S+G        F +P G+  D  DN++
Sbjct: 1448 TANDDGILERLDKSGDLVDNRIPTDPSLSRFVKSFGIAGGGDGCFNLPHGVATDPSDNIY 1507

Query: 448  VTD 456
            V D
Sbjct: 1508 VAD 1510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,325,047
Number of Sequences: 59808
Number of extensions: 294255
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)