Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0076
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)                   30   1.2  
SB_27573| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     28   6.4  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
          Length = 857

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 204 IVCKQFVTWSRSRCCQCWNYTILSAYIC-LASVLVPTRDHVSARASF 67
           I C+Q +TW  S C      T+ S Y+C + S     R H   R  F
Sbjct: 119 IQCEQCLTWQHSECVGLTELTVPSKYLCYVCSNPKGLRRHAKYRNDF 165


>SB_27573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 228 SLYLKLTFSSAFNLVTTCKSNLIDQGVLRNSIIGTDILDKCAFQILNSC*VLMNIT 395
           S+Y  L++SS+   V   +  +I +G++RN+ +   ++D   F   N   V    T
Sbjct: 105 SIYWPLSWSSSRLRVDADREKVIIEGIIRNNAVSGIVIDSIKFYEKNGMPVTRKYT 160


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 237 NRGKQTKNIDNIVCKQFVTWSRSRCCQCWN-YTILSAYICLASVLV 103
           N G   KN  N++    V W+      CW+ +T+ S++ C   VL+
Sbjct: 529 NPGPDGKNGKNVLVGLGVRWTHRLHVTCWSWFTLDSSFTCYLLVLM 574


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 164  VANVGTTQSCRLISA*HLCSYQHATTSPPEPRSLIGRVRREQERLTL 24
            + N GT  + +LIS     S   A +S P P++ +GR+    E +TL
Sbjct: 1318 IENEGTMSASKLISPVARASSLFAASSTPPPKN-VGRLSPPSESITL 1363


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 228 SLYLKLTFSSAFNLVTTCKSNLIDQGVLRNSIIGTDILDKCAF 356
           S+Y  L++SS+   V   +  +I +G++RN+ +   ++D   F
Sbjct: 45  SIYWPLSWSSSRLRVDADREKVIIEGIIRNNAVSGIVIDSIKF 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,282
Number of Sequences: 59808
Number of extensions: 314801
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)