Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0059
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         84   1e-16
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   0.97 
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              30   1.3  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           29   3.0  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 29   3.0  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)             29   3.9  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   6.9  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    28   6.9  
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)                 27   9.1  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 27   9.1  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +3

Query: 252 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 401
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 410 YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 255
           Y +  ++G   + T     D+C+P   + HGH    +ANT  CY  +  A  +T
Sbjct: 68  YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 102 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 221
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/73 (28%), Positives = 26/73 (35%)
 Frame = -2

Query: 303 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 124
           +C  V Q P AC   + S  GA +       Y C    K  V CG G          T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594

Query: 123 SRYVLPPKPLSSA 85
           S     P  L ++
Sbjct: 595 SAGFYCPVELGTS 607


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 133 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 2
           Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 133  YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 2
            Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +3

Query: 258  GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 422
            G  G+P G+V  +      +++++  +W   + E++  A + FP       S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
          Length = 811

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +1

Query: 313 SCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKXAASLMTA 492
           +CPCA     R   S  C    SSSPD   + Y+ S  +   +V+  +        L   
Sbjct: 432 NCPCA-----RAMDSATCEHDKSSSPDFTAAKYKYSSATDMDSVICEQEECSCLDHLSAN 486

Query: 493 ALCSTARNMDLSTLGGRFRLR-SSCI 567
           A  S  R M+  T     RL  +SC+
Sbjct: 487 AEYSNKREMEGVTCVESTRLELTSCV 512


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 260 CVWQASGYCSTCSHWTAHHV 319
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 289 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMS 450
           HV A   P  P + +    + +S   A+ +SS+P +  S  Q +  + + N  S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314


>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
          Length = 434

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 408 VSKKWGFTKYE---RDEFEKLREXGRLANDGCIVQYRPEHGPLDAW 536
           V K W  T +E   +     LR   R   D CI+ Y+ ++GPL  W
Sbjct: 390 VFKDWNCTYHELLIKANLSTLRN--RRLQDICILMYKVKNGPLPIW 433


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 115  RPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 2
            R +S+ S+ SC+ S  +    SGK   + LF  KS+ R
Sbjct: 983  RKSSRTSQRSCASSMSSSSAESGKLEQLNLFDGKSRKR 1020


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,255,394
Number of Sequences: 59808
Number of extensions: 444350
Number of successful extensions: 1360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)