Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0057
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 100 1e-21
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 87 1e-17
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 3e-16
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 77 1e-14
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 66 3e-11
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 63 2e-10
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 62 4e-10
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 8e-10
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 52 5e-07
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 50 1e-06
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 49 4e-06
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 44 2e-04
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24) 40 0.002
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 38 0.006
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8) 36 0.033
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 33 0.23
SB_59790| Best HMM Match : VWA (HMM E-Value=0) 31 0.70
SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092) 30 1.6
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 29 4.9
SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11) 28 6.5
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 6.5
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 100 bits (239), Expect = 1e-21
Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 14/183 (7%)
Frame = +2
Query: 104 YFKKVFI*FP*NIMAQNINPHYASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSD 283
Y K+ F + ++ N+ ++++ + + KL + AV + LQ EL +L
Sbjct: 1084 YMKRSFS-YSGAVLWNNLPKALRTATSLDQFKRELAKLDLSSAV-RALQLELKKLTEEPV 1141
Query: 284 KGISA-FPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPN 460
+G + P+ N F+W I GP T+YAG +K + FP+ YPY+PP +F+T +HPN
Sbjct: 1142 EGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPN 1201
Query: 461 VDTCGLICLDIL-------------KDKWTALYDVRTVLLSIQSLLAEPNTQSPLNQQAS 601
+ G +C+ IL ++W +VRT+LLS+ SLL EPNT SP N AS
Sbjct: 1202 IYESGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 1261
Query: 602 YLW 610
++
Sbjct: 1262 VMF 1264
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 87.0 bits (206), Expect = 1e-17
Identities = 47/133 (35%), Positives = 70/133 (52%)
Frame = +2
Query: 188 AKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYA 367
+++S K+ +KR+Q+EL E+ SA P+ ++L++W TI GP +VY
Sbjct: 81 SRKSSSRFTAKNQSTAAKRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYE 140
Query: 368 GHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLLSI 547
G + L + FP+ YP+ PP G++CLDILKD W+ + VLLSI
Sbjct: 141 GGVFFLDIHFPSDYPFKPPK---------------GMVCLDILKDSWSPALTISKVLLSI 185
Query: 548 QSLLAEPNTQSPL 586
SLL + N PL
Sbjct: 186 CSLLTDCNPADPL 198
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 82.6 bits (195), Expect = 3e-16
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 14/127 (11%)
Frame = +2
Query: 263 ELMRCSDKGISA-FPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFM 439
EL + +G SA + E+L+KW + GP T Y +K S+ FP YP PP + F+
Sbjct: 343 ELQKKPVEGFSAGLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFI 402
Query: 440 TPCFHPNVDTCGLICLDIL-------------KDKWTALYDVRTVLLSIQSLLAEPNTQS 580
+ +HPNV G +C+ IL ++W ++ V T++LS+ S+LAEPN +S
Sbjct: 403 SDIWHPNVHKNGEVCISILHEPGEDKYGYEKADERWRPIHTVETIMLSVISMLAEPNDES 462
Query: 581 PLNQQAS 601
P N A+
Sbjct: 463 PANVDAA 469
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 77.4 bits (182), Expect = 1e-14
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Frame = +2
Query: 356 TVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDIL----KDKWTALYD 523
T Y +KL ++ P YP+ PP V+F+TP +HPN+D+ G ICLD L K W +
Sbjct: 8 TPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALN 67
Query: 524 VRTVLLSIQSLLAEPNTQSPLNQQAS 601
+ +VL +I L+AEPN PL + S
Sbjct: 68 ISSVLSTILILMAEPNPDDPLMAEIS 93
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +2
Query: 404 SYPYAPPVVKFMTPCFHPNVDTCGLICLDIL----KDKWTALYDVRTVLLSIQSLLAEPN 571
S P+ PP V+F+TP +HPN+D+ G ICLD L K W ++ +VL +I L+AEPN
Sbjct: 38 STPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPN 97
Query: 572 TQSPLNQQAS 601
PL + S
Sbjct: 98 PDDPLMAEIS 107
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 63.7 bits (148), Expect = 1e-10
Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 13/139 (9%)
Frame = +2
Query: 188 AKQSEDTIKLKDNHAV---SKRLQKELMELMRCSDKGISAFPESENLFKW---IGTINGP 349
A+ S + ++ +HA SKRL KE ++ R +++ SA +NLF+W + TI+G
Sbjct: 717 AEPSMEVARMSSSHAQRVRSKRLMKEFQDVSRKTERIFSAELVDDNLFEWNVKLHTIDGD 776
Query: 350 ----LETVYAGHKY-KLSLEFPNSYPYAPPVVKFMTPCFHPN-VDTCGLICLDILKDK-W 508
+ V G K+ L++ FP ++P+APP ++ + P V G IC+++L K W
Sbjct: 777 SLLYRDMVETGSKFILLNITFPENFPFAPPFMRVLAPRIEGGFVLDGGAICMELLTPKGW 836
Query: 509 TALYDVRTVLLSIQSLLAE 565
++ Y V V+L + + +
Sbjct: 837 SSAYTVEAVVLQFSAAVVK 855
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/79 (34%), Positives = 45/79 (56%)
Frame = +2
Query: 188 AKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYA 367
+++S K+ +KR+Q+EL E+ SA P+ ++L++W TI GP +VY
Sbjct: 121 SRKSSSRFTAKNQSTAAKRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYE 180
Query: 368 GHKYKLSLEFPNSYPYAPP 424
G + L + FP+ YP+ PP
Sbjct: 181 GGVFFLDIHFPSDYPFKPP 199
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Frame = +2
Query: 254 ELMELMRCSDKGISAFPESE-NLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVV 430
EL EL + K E N+ W G I P Y +++ + FP YP+ PP +
Sbjct: 1 ELDELRKSGTKTFRDVKVDESNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKI 59
Query: 431 KFMTPCFHPNVDTCGLICLDILK-DKWTALYDVRTVLLSIQSLLAEPNTQSPL 586
F T +HPN+D G +CL I+ + W V+ ++ +L+ +P + PL
Sbjct: 60 TFKTKIYHPNIDEKGQVCLPIISPENWKPATKTEQVIQALLALVHDPEPEHPL 112
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 61.3 bits (142), Expect = 8e-10
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Frame = +2
Query: 239 KRLQKELMELMRCSDKGISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYA 418
KRL +E EL ++ A P +NLF+W T+ GP +T +AG +Y + P YP
Sbjct: 13 KRLMREAKELRNATEL-YHAQPLEDNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMK 71
Query: 419 PPVVKFMTPCFHPNVDTCGLICLDIL---KDKWTALYDVRTVLLSI 547
PP + +TP + + ICL + + W + +RTVL++I
Sbjct: 72 PPSIMLLTP--NGRFEIGKKICLSMSAHHPETWQPSWSIRTVLMAI 115
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +2
Query: 434 FMTPCFHPNVDTCGLICLDILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNQQASYL 607
F+T FHPNV G IC++ LK W ++ VLL+++ LL PN +S LN++A L
Sbjct: 147 FLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKL 204
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 347 PLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVD-TCGLICLDILKDKWTALYD 523
P + Y G ++K S++ YP PPV + + +HPN+D G +CL +L D W D
Sbjct: 45 PTDGAYRGGQFKFSVK-TEDYPNTPPVPRCVNNIYHPNMDLDDGSVCLSLL-DDWNESND 102
Query: 524 VRTVLLSIQSLLAEPNTQSPLN 589
+ ++ + L PN + PL+
Sbjct: 103 LEDLVQGLLFLFYNPNLEDPLS 124
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 51.6 bits (118), Expect = 6e-07
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Frame = +2
Query: 302 PESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTP-----CFHPNVD 466
P+ +++ K I GP +T Y G + + P YP PP VK MT F+PN+
Sbjct: 5 PDKDDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLY 64
Query: 467 TCGLICL----DILKDKWTALYDVRTVLLSIQSLLAEPNTQSPLNQQ 595
G +CL D+++ + YD +++ +S L N Q P ++
Sbjct: 65 RNGKVCLSIIGDVMEKSFPEFYDYYISVITEKSYLNGQNMQDPFGEK 111
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/81 (29%), Positives = 40/81 (49%)
Frame = +2
Query: 347 PLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTCGLICLDILKDKWTALYDV 526
P + Y G ++K S+ YP P + T +HPN+D +C+ +L D W A D+
Sbjct: 45 PTDGAYRGGQFKFSVR-TTDYPNVAPSINCKTKIYHPNMDGYDGVCMSLL-DDWQASNDL 102
Query: 527 RTVLLSIQSLLAEPNTQSPLN 589
++ + L PN + PL+
Sbjct: 103 EDLVQGLLFLFYNPNLEDPLS 123
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +2
Query: 293 SAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVV 430
SA P+ + L++W TI GP +VY G + L + FP YP+ PP V
Sbjct: 43 SAGPKGDKLYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPKV 88
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 311 ENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMT 442
+NLF+W T+ GP +T +AG +Y + P YP PP + +T
Sbjct: 1 DNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLT 44
>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
Length = 48
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 503 KWTALYDVRTVLLSIQSLLAEPNTQSPLNQQASYLW 610
KW+ +RTVLLSIQ+LL+ PN PL + W
Sbjct: 2 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW 37
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 287 GISAFPESENLFKWIGTINGPLETVYAGHKYKLSLEFPNSYPYAPP 424
GI E K G I GP ET + G Y L + P +YP+ PP
Sbjct: 676 GIKVELVDETFTKLKGEIRGPPETPFEGGTYNLDIVIPETYPFNPP 721
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 383 LSLEFPNSYPYAPPVVKFMTPCFHPN-VDTCGLICLDILKDK-WTALYDVRTVLLSIQSL 556
L++ F + +P+ PP V+ P V + G IC+++L + W++ Y + V++ I +
Sbjct: 575 LNMTFTDKFPFDPPFVRVCYPVIQAGYVLSGGAICMELLTPQGWSSAYTIEAVIVQISAT 634
Query: 557 LAE 565
L +
Sbjct: 635 LVK 637
>SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8)
Length = 55
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 338 INGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMT 442
+ GP++T Y+ + + FP +YP PP+VK +T
Sbjct: 12 VTGPVDTPYSRGCFVFDIFFPGTYPNVPPLVKLIT 46
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 338 INGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTPC---FHPNVDTCGLICL 487
I GP T Y + + P +YP APP +++ C +PN+ G +C+
Sbjct: 640 IEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYEDGKVCI 692
>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
Length = 4151
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 211 NRVFTLLSWVRRRRVMWIDVLSHNILRKSNEHFLKIAR 98
N V+ + + VR R+ + V H ++R HFLKI R
Sbjct: 4073 NSVYEIKNGVRLRKTINRSVTHHKVIRHGGHHFLKILR 4110
>SB_54917| Best HMM Match : Lectin_C (HMM E-Value=0.092)
Length = 565
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 146 AQNINPHY-ASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGISAFPESENLF 322
A +NPH A++ + E + KL+ + V + + CS+K A S ++F
Sbjct: 447 ADQVNPHLLATAVFTWAEGEPSTKLQTDTCVLLCGGDKRWHVADCSEKHHFACMSSHDVF 506
Query: 323 KW-IGTINGPLETVYAGHKYKLSL 391
KW I ++GP Y+ L
Sbjct: 507 KWLISAVSGPYNEPICPDGYQFGL 530
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 344 GPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMT 442
GP+ T Y G +K+ ++ P YP+ P + T
Sbjct: 56 GPVGTPYEGGVWKVRVDLPEKYPFKSPSIANFT 88
>SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 167 YASSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCSDKGI 292
Y S S+P+K+ + K+ + +KR + +EL++CS++ +
Sbjct: 120 YDSLSSPSKKIGNKRKIDQENTDTKRFKLNKVELIQCSERSL 161
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 329 IGTINGPLETVYAGHKYKLSLEFPNSYPYAPPVVKFMTP 445
+G + P T Y P++YPY+P V+ TP
Sbjct: 132 LGGTSAPASTAAPPLSYPAPTSSPHAYPYSPAQVQLSTP 170
>SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)
Length = 635
Score = 28.3 bits (60), Expect = 6.5
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = -2
Query: 582 GLCVFGS-AKRLWIDNNTVRTSYKAVHLSFKISKHIKPHVSTFG*KQGVINLTTGGAYGY 406
G VFG + W +N+ +S KA + + KP V ++ +G +YG
Sbjct: 507 GKNVFGGYSDNFWTSSNSYMSSNKAFLYTLYNPRGYKPEKLPGKSSTNVHSIYSGASYGP 566
Query: 405 EFGNSSDNLYLWPAYTVSKGPLMVPIHLKRFS-LSGN 298
FG D LY+ K P ++ S SGN
Sbjct: 567 TFGGGHD-LYIADKANTQKSSYTNPYSYQQPSGCSGN 602
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 260 MELMRCSDKGISAFPESENLFKWI 331
MEL +D GIS F ++ N F WI
Sbjct: 308 MELREIADSGISYFNDAWNYFDWI 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,764
Number of Sequences: 59808
Number of extensions: 420420
Number of successful extensions: 1092
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -