Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0050
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        110   1e-24
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        32   0.31 
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  30   1.6  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          29   2.2  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   2.9  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   2.9  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      29   3.8  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            28   5.0  
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 28   6.6  
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)               27   8.8  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  110 bits (264), Expect = 1e-24
 Identities = 50/75 (66%), Positives = 63/75 (84%)
 Frame = +2

Query: 23  LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
           L +VR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEI
Sbjct: 77  LADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEI 136

Query: 203 INDVHILKPGDKVGA 247
           INDVH++K  +K+ A
Sbjct: 137 INDVHLIKKDEKLKA 151


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -3

Query: 211 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 89
           I+D  NS   +  R  K+LEERG L+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 243  PTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 127
            P   P F+ C +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 50   ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 223
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 224  KPGDK 238
             PG K
Sbjct: 2129 TPGKK 2133


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +3

Query: 21  TSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 200
           TS  ++   WR K    L  + L    SS P +TPAS+     ++ L PSL   Q   + 
Sbjct: 565 TSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQETNVP 623

Query: 201 SS 206
            S
Sbjct: 624 KS 625


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 117 WAGMTTDNGAMAPGRAGAWTLFSNSL 40
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
 Frame = -1

Query: 393  PAWNLARRSSGLMSRISGAKIVPESY-TCLTTRPYENGEMFNMLRRVASEAPTLSP---G 226
            P+ N    S  L     GA   P  + T  T+ PY +          AS +PT+SP    
Sbjct: 1193 PSTNNDPVSQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSS 1252

Query: 225  FKMCTSLMISIVPFEILVGMERAWKKEVFS------GPRPVLWAGMTTDNGAMAP 79
               C+++     P    +G ERA ++   S      G  P++  G    NG   P
Sbjct: 1253 LAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPGISPLIGGGKLVGNGDSVP 1307


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -1

Query: 348 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 175
           +S + +VP+SY    TRP  NG+   +  + A E P+L+  F+    L  +I  +   I 
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218

Query: 174 VGMERAWK 151
              + AWK
Sbjct: 219 NAFDMAWK 226


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +2

Query: 137  EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 304
            E  S  Q+ + P   T++S G+   +  V  +KP  + G  + T ++  N+S  S     
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328

Query: 305  VKQVYDSGTIFAPEILDI 358
            VK ++ S T+  P  L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346


>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 36  VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 134
           V +C R        PVP PH ++S  PT P SV
Sbjct: 2   VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +2

Query: 239 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 406
           +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +   A VA  
Sbjct: 82  IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141

Query: 407 AALSLAI 427
           A  +LAI
Sbjct: 142 ALTTLAI 148


>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 48  WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 170
           +RT+SR+ L    LP+   + PP+  TP  +   PLS    PS
Sbjct: 68  YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 252 SEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMT 103
           S  P L P      S    I+P EILVG+ER  +K V  G    L   MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305


>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 3   RVHPRXTSLRSVTNCWRTKSRLQLVPVPLPHC 98
           RVH    ++  V+N     S++   P+PLP+C
Sbjct: 440 RVHKEFVAVGEVSNASAILSKISQNPLPLPNC 471


>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
          Length = 907

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 102 SSFPPTTPASVQRKPLSSKL---FPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFST 269
           S+ P   PA   +KP+ ++     PS P  +RVL+ SS ++     ++ +E+   PFST
Sbjct: 396 STTPRNKPAKPAKKPVVARTDHGCPS-PSAKRVLVSSSFVHLDGKSLSTIEVHFLPFST 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,084,801
Number of Sequences: 59808
Number of extensions: 416561
Number of successful extensions: 1090
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)