Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0049
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       29   3.1  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 22  EPKPTSPARGAPCRLANEALAETHWNRRTGHRPTS*ANPANT*KFQF 162
           EP+  +P+ G       +    THW  R+  + T  A   N+ KF+F
Sbjct: 607 EPRLYNPSSGRTMYSKAQVQQRTHWKSRSNMQSTRSATGRNSSKFKF 653


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 48   RCTLPISERGSGGDALEPSYRSPTYILGESSQYIKVPVL 164
            R TL       G D  +P+    T+  GE+ + +K+P+L
Sbjct: 997  RITLNEGSAKDGQDYSQPAVLQDTFAPGETDKVVKIPIL 1035


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,879,777
Number of Sequences: 59808
Number of extensions: 249049
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)