Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0047
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29) 118 3e-27
SB_38328| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 9e-11
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0) 64 9e-11
SB_34638| Best HMM Match : Fork_head (HMM E-Value=0) 62 5e-10
SB_5331| Best HMM Match : Fork_head (HMM E-Value=0) 62 5e-10
SB_47058| Best HMM Match : Fork_head (HMM E-Value=0) 62 5e-10
SB_10836| Best HMM Match : Fork_head (HMM E-Value=0) 59 3e-09
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_5069| Best HMM Match : Fork_head (HMM E-Value=0) 56 2e-08
SB_53442| Best HMM Match : Fork_head (HMM E-Value=0) 56 2e-08
SB_3400| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_13048| Best HMM Match : Fork_head (HMM E-Value=0) 55 6e-08
SB_15500| Best HMM Match : Fork_head (HMM E-Value=1.7e-39) 54 1e-07
SB_10139| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_39140| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21) 49 3e-06
SB_12905| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_5489| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06) 33 0.27
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 31 0.62
SB_51547| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_48553| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_55219| Best HMM Match : Lipoprotein_17 (HMM E-Value=4.5) 29 3.3
SB_9455| Best HMM Match : Fork_head (HMM E-Value=0.021) 29 3.3
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 4.3
SB_16247| Best HMM Match : Flu_B_NS1 (HMM E-Value=9.7) 28 5.7
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30) 28 7.6
SB_12924| Best HMM Match : Fork_head (HMM E-Value=0.88) 28 7.6
>SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)
Length = 594
Score = 118 bits (285), Expect = 3e-27
Identities = 55/96 (57%), Positives = 69/96 (71%)
Frame = +2
Query: 236 RRRVSDKSGVAIAGEIQRNREFYKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQ 415
R R SD G+++ +IQR+ +FY+ ADVRPPFTYA LIR AI++S D Q+TLNEIY+W
Sbjct: 382 RSRTSDPDGISL--DIQRSADFYQKADVRPPFTYASLIRQAILDSPDTQLTLNEIYSWFT 439
Query: 416 STFCYFRRNAXTWKNAVRHNLXXXQMLYARXERKGS 523
TF YFRRNA TWKNAVRHNL + + KG+
Sbjct: 440 RTFAYFRRNAATWKNAVRHNLSLHKCFVRKENVKGA 475
>SB_38328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/72 (40%), Positives = 46/72 (63%)
Frame = +2
Query: 305 KTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNLXX 484
K +V+PP++Y LI AI ES +K++TLN IY + S F Y+ +N W+N++RHNL
Sbjct: 39 KDPNVKPPYSYVALIAMAIRESPEKRLTLNGIYQYIISKFPYYEKNKKGWQNSIRHNLSL 98
Query: 485 XQMLYARXERKG 520
+ + + R+G
Sbjct: 99 NE-CFIKVPREG 109
>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 460
Score = 64.1 bits (149), Expect = 9e-11
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2
Query: 302 YKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
++T + +PP++YA LI AI S +K++TL+EIY W F Y++ WKN++RHNL
Sbjct: 67 HQTKESKPPYSYANLITFAINSSPEKKMTLSEIYQWICDHFPYYKEAGNGWKNSIRHNL 125
>SB_34638| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 312
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +2
Query: 302 YKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
Y +V+PPF+Y LI +I S + TLNEIY + + F YFR+N W+N++RHNL
Sbjct: 86 YLCDEVKPPFSYIALITMSIEASPYRMRTLNEIYEFIMTRFPYFRKNQQKWQNSIRHNL 144
>SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 503
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/79 (35%), Positives = 50/79 (63%)
Frame = +2
Query: 242 RVSDKSGVAIAGEIQRNREFYKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQST 421
+ + +G +++G+ + + E K+ D +PP++YA LI AI+ + DKQ+TL+ IY
Sbjct: 91 QAASSAGSSVSGD-KSSSEGGKSEDGKPPYSYAQLIVQAILSATDKQLTLSGIYAHITKN 149
Query: 422 FCYFRRNAXTWKNAVRHNL 478
+ Y+R W+N++RHNL
Sbjct: 150 YPYYRTADKGWQNSIRHNL 168
>SB_47058| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 312
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +2
Query: 302 YKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
Y +V+PPF+Y LI +I S + TLNEIY + + F YFR+N W+N++RHNL
Sbjct: 86 YLCDEVKPPFSYIALITMSIEASPYRMRTLNEIYEFIMTRFPYFRKNQQKWQNSIRHNL 144
>SB_10836| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 458
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +2
Query: 320 RPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
+PP++++ LI AI ES +K++ + +IYNW F YFR WKN+VRHNL
Sbjct: 122 KPPYSFSSLIFMAIEESPNKRLPVKDIYNWIMDHFPYFRDARLGWKNSVRHNL 174
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/54 (42%), Positives = 37/54 (68%)
Frame = +2
Query: 317 VRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
V+PP++Y LI AI + +K++TL+ IY++ F Y+R N W+N++RHNL
Sbjct: 57 VKPPYSYIALIAMAIQSAPEKRITLSGIYSFIMDRFPYYRNNKQGWQNSIRHNL 110
>SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/53 (43%), Positives = 37/53 (69%)
Frame = +2
Query: 320 RPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
+PP++Y LI AI +S +K +TL+EIY + F Y+R+N W+N++RH+L
Sbjct: 39 KPPYSYISLITMAIQQSPNKMLTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSL 91
>SB_5069| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 331
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +2
Query: 311 ADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
ADV+P +Y LI AI+ ++ K++ L +IY + F Y+R +W+N++RHNL
Sbjct: 79 ADVKPAHSYIALIAMAILSNSSKKMILGDIYQYISDNFPYYRNKDKSWRNSIRHNL 134
>SB_53442| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 407
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/75 (34%), Positives = 46/75 (61%)
Frame = +2
Query: 254 KSGVAIAGEIQRNREFYKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYF 433
KS +I+ E N ++ + +PP++YA LI A+ ++ ++TL+ IY W + F ++
Sbjct: 78 KSSESISKE--PNIDYKNDPNHKPPYSYATLICMAMRDTKRVKITLSAIYKWIKENFMFY 135
Query: 434 RRNAXTWKNAVRHNL 478
R TW+N++RHNL
Sbjct: 136 RVADPTWQNSIRHNL 150
>SB_3400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +2
Query: 302 YKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFR-RNAXTWKNAVRHNL 478
Y A +PP++Y LI AI +S +++TLN IY++ S F Y+ +N W+N++RHNL
Sbjct: 55 YTPAPQKPPYSYVALISMAIKQSPGRKITLNGIYHFITSAFPYYTWQNKRGWQNSIRHNL 114
>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +2
Query: 320 RPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
+P +Y LI AI+ESA+K++TL+EIY+ + F +F WKN VRHNL
Sbjct: 19 KPSTSYVALISTAILESAEKRLTLSEIYDAIELKFPWFTATRMGWKNTVRHNL 71
>SB_34624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/53 (41%), Positives = 36/53 (67%)
Frame = +2
Query: 320 RPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
+PP++Y LI AI S +Q+TL+EIY++ F +++ + WKN++RHNL
Sbjct: 43 KPPYSYIALICMAITSSPQRQLTLSEIYDFISQRFPFYQTCSIKWKNSIRHNL 95
>SB_13048| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 311
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/57 (38%), Positives = 39/57 (68%)
Frame = +2
Query: 308 TADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
TA +PP++Y LI AI++S +++TL++I + + F Y+R +W+N++RHNL
Sbjct: 60 TALSKPPYSYIALITMAILQSPQRKLTLSDICEFIKRRFPYYREKFPSWQNSIRHNL 116
>SB_15500| Best HMM Match : Fork_head (HMM E-Value=1.7e-39)
Length = 554
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +2
Query: 305 KTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
K ++PP +Y LI AI+ S +K++TL EI + + +FR + WKN+VRHNL
Sbjct: 128 KAERMKPPHSYIALIATAILNSPEKRLTLTEINEYLVKHYVFFRGSYQGWKNSVRHNL 185
>SB_10139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +2
Query: 299 FYKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
++ T + +P +Y LI AI+ K++ L++IYN+ + + YFR W+N++RHNL
Sbjct: 92 YHVTEEEKPSQSYIGLIGKAIMSVPQKKLVLSDIYNYILTHYPYFRNKGAGWRNSIRHNL 151
>SB_665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +2
Query: 269 IAGEIQRNREFYKTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAX 448
I + R F + +P +Y LI AI+ S ++++ L++IYN+ + + YFR
Sbjct: 63 IPTQFLRFNSFVTYSHEKPNQSYISLISEAILSSPEQKLILSDIYNFILTRYPYFRTKGT 122
Query: 449 TWKNAVRHNL 478
W+N++RHNL
Sbjct: 123 GWRNSIRHNL 132
>SB_39140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Frame = +2
Query: 329 FTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFR-----RNAXTWKNAVRHNLXXXQM 493
++YA LI AI S +K++TL++IY+W ++ YFR ++ WKN++RHNL
Sbjct: 67 YSYADLITQAIQSSPEKRLTLSQIYDWMVNSVPYFRDKGDSNSSAGWKNSIRHNLSLHSK 126
Query: 494 LYARXERKGS 523
+ R + +G+
Sbjct: 127 -FVRVQNEGN 135
>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
Length = 491
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 320 RPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWK 457
RPP++YA LI AI + +K++TL EIY W + F Y+ + WK
Sbjct: 60 RPPYSYATLILLAINSTEEKRMTLQEIYKWIEERFPYYTKCKKAWK 105
>SB_12905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/94 (29%), Positives = 47/94 (50%)
Frame = +2
Query: 197 SGAPSEGTSPGPVRRRVSDKSGVAIAGEIQRNREFYKTADVRPPFTYAYLIRXAIIESAD 376
S A G S G V+ S + GE + ++ RPP++Y LI A+ S +
Sbjct: 71 STASERGRSSGGVKDTESVEDD---RGEGGKKARTHRKCRRRPPYSYIALIAMAVQNSPE 127
Query: 377 KQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
K++TL+ I + + F ++R +WK +R+NL
Sbjct: 128 KRLTLDGICKFIRDRFPFYRETYPSWKICIRNNL 161
>SB_5489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 332 TYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXT--WKNAVRHNL 478
+Y+ L+ AI S DK++TL EIY W + ++ T WKN +RH L
Sbjct: 451 SYSDLLAEAISSSPDKRLTLQEIYMWFEDNVAGISPSSVTHDWKNTIRHTL 501
>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +2
Query: 332 TYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRR-----NAXTWKNAVRHNLXXXQ 490
+Y+ LI AI +S +++TL +IY+W YF+ + WKNA+RH L Q
Sbjct: 750 SYSDLIARAIDQSKFQKLTLPQIYDWFVINVPYFKAKEHLPSTKGWKNAIRHTLSLRQ 807
>SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 332 TYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYF-RRNAXTWKNAVRHNL 478
T+ +I +I+ K++TL+ IY++ + +F + W+N+VRHNL
Sbjct: 129 TFVAVIAQSILSVPTKRMTLSSIYSFIAKNYPHFDKEKGPGWRNSVRHNL 178
>SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06)
Length = 246
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 332 TYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFR 436
+Y+ LI AI +S +++TL +IY W YFR
Sbjct: 136 SYSDLIARAITQSTKQKLTLPQIYEWFVENVSYFR 170
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 222 HRGPLEDAS--PISQESPLPERSNGTVSSTRRRTCGLHSHTR 341
H P+ D+S P+ SP R N SSTR TC +S+ R
Sbjct: 209 HSDPVLDSSFTPLMTLSPENRRQNNATSSTRPSTCKTNSYVR 250
>SB_51547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 383 VTLNEIYNWXQSTFCYF-RRNAXTWKNAVRHNL 478
+TL+ IY++ T+ +F + W+N+VRHNL
Sbjct: 1 MTLSCIYSFIAKTYPHFDKEKGPGWRNSVRHNL 33
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 225 RGPLEDASPISQESPLPERS 284
R P+ SP+SQ SP+P+RS
Sbjct: 617 RSPVSQRSPVSQNSPVPQRS 636
>SB_48553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 231 PLEDASPISQESPLPERSNG-TVSSTRRRTCGLHSHTRTSYGR 356
P S + SP ERS+ T SST +R+ LH H R S R
Sbjct: 96 PKSKRSSAATSSPKSERSSAATSSSTGKRSSQLHHHPRASCHR 138
>SB_55219| Best HMM Match : Lipoprotein_17 (HMM E-Value=4.5)
Length = 210
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 332 TYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNA 445
+Y+ +I AI+ ++ TL+ IY W + YF A
Sbjct: 164 SYSEMISKAIMSCPSQEATLHTIYEWIVNNVSYFADKA 201
>SB_9455| Best HMM Match : Fork_head (HMM E-Value=0.021)
Length = 266
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 332 TYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNA 445
+Y+ +I AI+ ++ TL+ IY W + YF A
Sbjct: 164 SYSEMISKAIMSCPSQEATLHTIYEWIVNNVSYFADKA 201
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 237 EDASPISQESPLPERSNGTVSSTRRRTCGLHSHTRTSYGRP 359
++ASP S SPLP S+ + T +R R +YG P
Sbjct: 231 QNASPSSSSSPLPSSSSSSEEETEKRDSFFLGSPR-NYGSP 270
>SB_16247| Best HMM Match : Flu_B_NS1 (HMM E-Value=9.7)
Length = 556
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 272 AGEIQRNREFYKTADVRP-PFTYAYLIRXAIIESADKQV 385
AG ++ RE+ + +++R PFT A + R I+E DK++
Sbjct: 177 AGIWEKGREYPRLSEIRASPFTGAKMTRGKILERFDKKL 215
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 210 ARGHHRGPLEDASPISQESPLPERSNGTVSSTRR 311
+RG+ G L +SP+S L E+ GTV +R
Sbjct: 465 SRGNSSGSLLRSSPVSTSHMLSEKGGGTVHKRKR 498
>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
Length = 289
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 422 FCYFRRNAXTWKNAVRHNL 478
F ++R N W+N++RHNL
Sbjct: 4 FPFYRDNTQRWQNSLRHNL 22
>SB_12924| Best HMM Match : Fork_head (HMM E-Value=0.88)
Length = 48
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 332 TYAYLIRXAIIESADKQVTLNEIYNWXQ 415
TY+ L+ AI S ++++TL IY W +
Sbjct: 4 TYSELLAKAISSSPEQRLTLQGIYRWFE 31
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,883
Number of Sequences: 59808
Number of extensions: 210941
Number of successful extensions: 642
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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