Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0034
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               106   2e-23
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 50   3e-06
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  106 bits (254), Expect = 2e-23
 Identities = 54/95 (56%), Positives = 61/95 (64%)
 Frame = +2

Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
           VRTIAMDGTE L+RGQ  + +G PI  P    TL  IINV G PID RGP+ TDK AAIH
Sbjct: 121 VRTIAMDGTEGLIRGQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIH 180

Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
           AE+P  V+   + E     IKV D L PYA GG I
Sbjct: 181 AEAPEFVEMSTEQEILETGIKVVDLLAPYAKGGKI 215



 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 37/47 (78%), Positives = 44/47 (93%)
 Frame = +1

Query: 133 GKVVAVIGAXVDVQFEDNLPPILNALEVQNRSPRLVLEVTQHLGXNT 273
           GKV+AVIGA VDVQF+++LPPILNALEV+NR+PRL+LEV QHLG NT
Sbjct: 74  GKVLAVIGAVVDVQFDEDLPPILNALEVENRTPRLILEVAQHLGENT 120



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/36 (61%), Positives = 25/36 (69%)
 Frame = +1

Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDL 693
           GKT LIMELINNV +AHG YS  AG G +P    D+
Sbjct: 224 GKTVLIMELINNVAKAHGGYSVFAGVGYQPTLATDM 259


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/41 (56%), Positives = 27/41 (65%)
 Frame = +1

Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEMI 708
           GKT LI ELINN+ + HG  S  AG GER  + NDL  EM+
Sbjct: 31  GKTVLIQELINNIAKGHGGLSVFAGVGERTREGNDLLREML 71


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 284 IAMDGTECLVR-GQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIHAE 460
           + + G + L++ G  V  +G+ +  P     L  +++  G PID +GP    + A +  +
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70

Query: 461 SPXVVDXXAQHETXVXVIKVXDXLXPYAXG 550
           +P ++   +  E  +  IK  D L P   G
Sbjct: 71  APGIIPRTSVKEPMLTGIKAVDSLVPIGRG 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,509,014
Number of Sequences: 59808
Number of extensions: 291799
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)