Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0298
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 71 6e-13
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_21816| Best HMM Match : DUF1279 (HMM E-Value=1.1) 28 4.2
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 28 4.2
SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031) 28 4.2
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 7.3
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 70.9 bits (166), Expect = 6e-13
Identities = 39/81 (48%), Positives = 45/81 (55%)
Frame = +2
Query: 137 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ*CAKPSKTTWTTIQPSRNC 316
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGK K +
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 317 CHTSRATXGFVFTRGDLVEVR 379
+ GFVFT+ DL +VR
Sbjct: 61 LPHIKGNIGFVFTKEDLADVR 81
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 387 LLENKVQAXARPGXIAPLSV 446
++ENKV A A+ G IAP+ V
Sbjct: 84 IMENKVAAPAKAGVIAPIDV 103
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 250 KNTMMRKAIKDHLDNNPALEKLLPHIKG 333
K T++RK +K HLDN P L K LP + G
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDG 194
>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 276 QRPPGQQSSPRETVATHQGQRLASCSPAETSLRSV 380
+RPPG+Q +P ET + Q Q LAS AET + +
Sbjct: 132 RRPPGEQENPLETKPSAQ-QILASVGKAETDPKMI 165
>SB_21816| Best HMM Match : DUF1279 (HMM E-Value=1.1)
Length = 894
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +3
Query: 198 RCSRSVSRYVAPVSCSWEKHNDAQSHQRPPGQQSSPRET-VATHQGQRLASCSPAETSLR 374
RC R V+ +PV C E+H D+ G+ P T + Q S A TS
Sbjct: 618 RCQREVAAADSPVVCLPERHTDS-------GESDIPERTHTQMEEPQGSTSAQTAGTSAE 670
Query: 375 SVTKLLENKVQAXAR-PGXIA 434
+ E Q AR P +A
Sbjct: 671 PDKQAAEQAAQEPARTPSALA 691
>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
Length = 1532
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 189 ARNRCSRSVSRYVAPVSCSWEKHNDAQS-HQRPPGQQSSPRETVA---THQGQRLASCSP 356
A RC + V+ +P C E+H D+ S +P G + P + A + +R+ S P
Sbjct: 1175 ADTRCQQEVAAADSPAVCLPERHTDSGSTSAQPAGTSAEPAQEPARTPSALAERITSPEP 1234
Query: 357 AET 365
T
Sbjct: 1235 PAT 1237
>SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)
Length = 599
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 272 PSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRD 382
P K+ T I+P CH ++A GF +R V V D
Sbjct: 309 PPKSIETDIRPISLTCHFAKAMEGFTLSRSLPVMVND 345
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 294 QSSPRETVATHQGQRLASCSPA-ETSLRSVTKLLENKVQAXARPGXIAPLSVXXSRPQH 467
+ +P + VA + Q A PA + LR L N V A + P+SV +P H
Sbjct: 412 EENPAQNVAALEQQAKACVQPAIDWFLRKFNVQLYNTVLAFKAARYVCPVSVQWLKPTH 470
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 151 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGK 252
VPKMFH RG+ T+A P + T +L+ R G+
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGR 3890
>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 184 RGLATDAADPYLATWLQYRAHGKNTMMRKAIKDHLDNNPALEKL-LPHIKGN 336
RGL Y TW A T + I D +DNN A+ L L H N
Sbjct: 678 RGLHQGLIPSYSMTWDSTLASAAETWALQLINDDVDNNVAMTTLNLVHSSPN 729
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 285 PGQQSSPRETVATHQGQRLASCSPAETSLRS-VTKLLENKVQAXARPGXIAP 437
PG SP TVA S + ET+L S T LE + + IAP
Sbjct: 1578 PGTTVSPESTVAQESTVSSESTAAPETNLASESTVTLETSISSEGSESTIAP 1629
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,343
Number of Sequences: 59808
Number of extensions: 324029
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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