Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0251
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 106 1e-23
SB_54890| Best HMM Match : XH (HMM E-Value=3.4) 56 3e-08
SB_54960| Best HMM Match : Penaeidin (HMM E-Value=4.4) 33 0.21
SB_27106| Best HMM Match : PLDc (HMM E-Value=7e-05) 33 0.21
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42) 29 2.6
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_30813| Best HMM Match : Drf_FH1 (HMM E-Value=0.023) 29 4.5
SB_18472| Best HMM Match : CcmD (HMM E-Value=3.3) 28 7.9
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 106 bits (255), Expect = 1e-23
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = +2
Query: 17 ILVECLVPDFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMAK 196
+LVECL PDFR R + VA SGLDV+AHNVETV+ L VRDPRA Y+Q+L VL+ K
Sbjct: 150 MLVECLTPDFRGNREHIRTVAESGLDVYAHNVETVKSLQLLVRDPRANYKQSLDVLRYVK 209
Query: 197 EINPDLITKSSIMLGLGET 253
E+ P+++TK+SIMLG+GET
Sbjct: 210 EVRPEMVTKTSIMLGVGET 228
>SB_54890| Best HMM Match : XH (HMM E-Value=3.4)
Length = 209
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 238 GTRRDRAQVEQTMKDLREAGVDCVTLGQYMQPTKKHLKVFEYVTP 372
G +V Q + DLR+A VD VT+GQY+QP+KKHL V EY++P
Sbjct: 130 GLGEKEEEVIQVLHDLRDANVDIVTIGQYLQPSKKHLPVKEYISP 174
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/76 (43%), Positives = 47/76 (61%)
Frame = +2
Query: 23 VECLVPDFRAVRGCVARVASSGLDVFAHNVETVERLTPFVRDPRAGYRQTLKVLQMAKEI 202
+E L+PDF+ + R+ +V +HN+ETV+RLT VR +A Y ++L+VL+ K
Sbjct: 60 LETLIPDFQGNTRNLDRIIEVAPEVVSHNMETVKRLTREVR-IQAKYEKSLEVLRYLKAQ 118
Query: 203 NPDLITKSSIMLGLGE 250
TKS IMLGLGE
Sbjct: 119 GIKR-TKSGIMLGLGE 133
>SB_54960| Best HMM Match : Penaeidin (HMM E-Value=4.4)
Length = 308
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 431 SAGHVQKPSCGRAPPTAEPAGVTYSNTLRCFFVGCMY 321
+AG + +P GR PT+ A ++ N RC+F GC Y
Sbjct: 131 AAGALARPEAGRDRPTSSEACRSW-NFARCYFPGCRY 166
>SB_27106| Best HMM Match : PLDc (HMM E-Value=7e-05)
Length = 515
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 431 SAGHVQKPSCGRAPPTAEPAGVTYSNTLRCFFVGCMY 321
+AG + +P GR PT+ A ++ N RC+F GC Y
Sbjct: 242 AAGALARPEAGRDRPTSSEACRSW-NFARCYFPGCRY 277
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 431 SAGHVQKPSCGRAPPTAEPAGVTYSNTLRCFFVGCMY 321
+AG +P GR PT+ A ++ N +CFF GC Y
Sbjct: 355 AAGEFARPEAGRDRPTSSEACRSW-NFAKCFFPGCRY 390
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 264 GADHER--STRGGSGLRNAGPVHAAHEEA 344
GADH R S+ G GL +AG +H+ HE++
Sbjct: 620 GADHWRDSSSYSGQGLHSAGSLHSIHEQS 648
>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 101 AHNVETVERLTPFVRDPRAGYRQTLKVLQMAKEINPDLI 217
A + T R P+ DP GYR L +L A +IN L+
Sbjct: 201 ASSATTSNRPKPYTEDPDPGYRFILGMLSHAMDINRRLV 239
>SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)
Length = 436
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 165 RYPALGSRTKGVSLSTVSTLCANTSRPLEATRATQPRTARKSGTRHST 22
++P L S T + +T ST C + +P + + P+ R + HST
Sbjct: 57 KFPVLSSLTTMFTSTTASTSCTSAFKPFKTEKENSPK--RHKSSVHST 102
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 237 WDSARPRASGADHERST-RGGSGLRNAGPVHAAHEEAPQ 350
WD P A G +E ST RG S +++AG ++ HE Q
Sbjct: 467 WDGY-PHALGRGYEESTPRGKSTVKHAGDLYIRHEFVKQ 504
>SB_30813| Best HMM Match : Drf_FH1 (HMM E-Value=0.023)
Length = 272
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 313 LGQYMQPTKKHLKVFEYVTPAGSAVGGARPQLG 411
LG + PTK+ L VF+ TP G V + Q G
Sbjct: 61 LGVFKSPTKRGLGVFKSSTPEGMGVSKSPTQRG 93
>SB_18472| Best HMM Match : CcmD (HMM E-Value=3.3)
Length = 304
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 265 EQTMKDLREAGVDCVTLGQYMQPTKKHL 348
EQT+ D +AGV ++ G + + T+K L
Sbjct: 253 EQTLNDTLDAGVHLISFGNFTKQTQKPL 280
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,958,892
Number of Sequences: 59808
Number of extensions: 399833
Number of successful extensions: 1407
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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