Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0245
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 133 1e-31
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 48 7e-06
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 46 2e-05
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 44 1e-04
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 42 3e-04
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 42 4e-04
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 42 4e-04
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 42 6e-04
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.001
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.002
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 39 0.003
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 38 0.007
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.010
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.022
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.089
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 34 0.12
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 34 0.12
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.12
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26) 32 0.36
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 31 0.62
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.62
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.62
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 31 0.62
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.1
SB_36660| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49) 29 2.5
SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71) 29 2.5
SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7) 29 2.5
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 29 4.4
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 28 5.8
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 7.7
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 28 7.7
SB_6969| Best HMM Match : Astacin (HMM E-Value=0) 28 7.7
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 133 bits (321), Expect = 1e-31
Identities = 68/132 (51%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Frame = +2
Query: 41 SLCFVYPLDFARTRLAAD--VGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 214
SL FVY LD+ RTRLA D VGK G+R+F+G+ + K SDGL+GLYRGF +S GI
Sbjct: 127 SLFFVYSLDYCRTRLANDAKVGKKGGERQFNGMIDVYKKTIASDGLVGLYRGFVISCVGI 186
Query: 215 IIYRASYFGFYDTARHAADPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRA 394
I+YR YFG YDT + ++ +VIS+ + VT AG+ SYP DT+RRRMMM SG A
Sbjct: 187 IVYRGFYFGLYDTLKPILLGEDAGVVISFVLGYGVTVSAGLASYPIDTIRRRMMMTSGEA 246
Query: 395 KSDILYKNTIHC 430
+ YK +I C
Sbjct: 247 ---VKYKGSIDC 255
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 122 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAADPKNT 283
+ G+ +C S+ ++S+G + +RG + +A F F D + PK T
Sbjct: 53 YKGVIDCTSRTYRSEGFLSFWRGNLANCIRYFPTQALNFAFKDQVKALFKPKKT 106
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Frame = +2
Query: 53 VYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRAS 232
+YPL+ +TRLA + GQ + GL + S I++ +G+ YRG S+ GII Y
Sbjct: 248 IYPLEVLKTRLAI---RKTGQ--YRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGI 302
Query: 233 YFGFYDTAR------HAADPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQS 385
Y+T + H + +++ A +T + SYP VR R+ Q+
Sbjct: 303 DLAVYETLKNFYLNYHKNQSADPGVLVLLACGTASSTCGQLASYPLSLVRTRLQAQA 359
Score = 36.7 bits (81), Expect = 0.017
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 56 YPLDFARTRLAADVG-KGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRAS 232
YPL RTRL A KG GQ + + + + KI DG GLYRG + + +
Sbjct: 346 YPLSLVRTRLQAQAREKGGGQGD--NMVSVLRKIITEDGFKGLYRGLAPNFLKVAPAVSI 403
Query: 233 YFGFYDTARHAADPKNTP 286
+ Y+ R K+ P
Sbjct: 404 SYVVYENLRLGLGVKSYP 421
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Frame = +2
Query: 53 VYPLDFARTRLAAD-VGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRA 229
VYP + +TRL V K + + G+ + + I + +G++ LY+G S G+ +
Sbjct: 170 VYPCEVIKTRLTVQHVNKSNAH--YKGMRHALKTILREEGILALYKGVTPSFLGLFPFAG 227
Query: 230 SYFGFYDTARHA----ADPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMM 379
F Y +P TPI + + A +S+PFDT+R++M +
Sbjct: 228 GSFLAYQILDKVDSTRTEPSATPICM-FVNGCVAGAFAHTLSHPFDTIRKKMQL 280
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 38 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGII 217
T+ YPLD R RLA K +++GL N ++I++ +G+ YRG+ ++ GI+
Sbjct: 2 TAALLTYPLDMVRARLAITQKK-----KYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIM 56
Query: 218 IYRASYFGFYDTARHA 265
Y F Y+T + A
Sbjct: 57 PYAGISFFTYETCKKA 72
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = +2
Query: 56 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASY 235
+PLD R RL ++G+ + + +I +G+ GLY+G S+ I +
Sbjct: 47 HPLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLVPSLVSIAPFLGVQ 106
Query: 236 FGFYDTAR-HAADPKNTPIVISWAIAQTVT-TVAGIISYPFDTVRRRMMMQSGRAKS 400
YD + A D ++ + + +A + +P D VRR+M + GR+ S
Sbjct: 107 QSVYDIMKLRALDSAFAANSGTFLVCGAIAGMIAQTVVHPLDVVRRQMQVDRGRSGS 163
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 42.3 bits (95), Expect = 3e-04
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 15/150 (10%)
Frame = +2
Query: 38 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSD-GLIGLYRGF-GVSVQG 211
T+ YPLD R+RLA V + + G+ + +IF ++ G++ LYRGF S+
Sbjct: 11 TACSCTYPLDIVRSRLAFQVA---DEHTYCGICQTVKQIFMTEGGMVALYRGFTPTSLSM 67
Query: 212 IIIYRASYFGFYDTARHAADPKNTPIVISWAIAQTVTTVAG-------------IISYPF 352
I ++ F K I +TV T G ++YP
Sbjct: 68 IPAVGIGFYAFESFKDFFVAMKGVLTRIHPETGETVLTAPGGLLCGALAGATSQTLAYPL 127
Query: 353 DTVRRRMMMQSGRAKSDILYKNTIHCWATI 442
D VRRRM + +G Y I+ + ++
Sbjct: 128 DVVRRRMQL-AGTVADGHKYSTCINTFISV 156
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 38 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGL-IGLYRGFGVSVQGI 214
TS YPLD R R+ DG + +S N ++ DG+ GLYRG ++ +
Sbjct: 119 TSQTLAYPLDVVRRRMQLAGTVADGHK-YSTCINTFISVYTEDGIRRGLYRGLSINYLRV 177
Query: 215 IIYRASYFGFYDTAR 259
A F Y+ +
Sbjct: 178 CPQVAVMFAVYEVVK 192
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 41.9 bits (94), Expect = 4e-04
Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 14/128 (10%)
Frame = +2
Query: 38 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFG------V 199
T+ YPLD R+RLA V + G + CIS K G LY+GF V
Sbjct: 77 TACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS--VKEGGPKALYKGFVPTLLTIV 134
Query: 200 SVQGIIIYRASYFGFYDTARHAADPKNTP--------IVISWAIAQTVTTVAGIISYPFD 355
GI Y Y A P I+ + V+ I+YP D
Sbjct: 135 PAMGIGFYMFETMKAYFLETRIAFTNTNPDTLCPELSIIGGFVCGGVAGAVSQTIAYPLD 194
Query: 356 TVRRRMMM 379
VRRRM +
Sbjct: 195 VVRRRMQL 202
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 41 SLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLI-GLYRGFGVSVQGII 217
S YPLD R R+ DG + ++ N + ++K DG+ GLYRG ++ +
Sbjct: 186 SQTIAYPLDVVRRRMQLAGAVPDGHK-YNTCINTLVNVYKDDGIRRGLYRGLSINYLRVC 244
Query: 218 IYRASYFGFYDTAR 259
A FG Y+ +
Sbjct: 245 PQVAIMFGVYEVTK 258
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/93 (22%), Positives = 37/93 (39%)
Frame = +2
Query: 152 IFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAADPKNTPIVISWAIAQTVTTVA 331
I++++GL+ ++G G + Y A F Y+ ++P + A
Sbjct: 20 IYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKVLQT-SSPAINKLVAGSLAGMTA 78
Query: 332 GIISYPFDTVRRRMMMQSGRAKSDILYKNTIHC 430
+YP D VR R+ Q + + TI C
Sbjct: 79 CACTYPLDMVRSRLAFQVAQDQGYTTITQTIRC 111
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAADPKN---- 280
Q ++G +C+ K+F S+GL G +RG ++ I A YFG + PK
Sbjct: 294 QMAYTGSLDCLKKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSFQYVCELLTPKGEHVD 353
Query: 281 --TPIVISWAIAQTVTTVAGIISYPFDTVR 364
+PI + ++ T++ I++YP D V+
Sbjct: 354 NLSPIRLFFS-GGIAGTLSWILTYPVDMVK 382
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 122 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY-DTARHAADPKNTPIVIS 298
++G+ +C +I K + ++GLY+G + G+ + A FG +T R IS
Sbjct: 191 YNGVFDCFKQIIKRESVLGLYKGMASPLAGLGLINAIIFGVQGETLRRLNGSGTMAQAIS 250
Query: 299 WAIAQTVTTVAGIISYPFDTVRRRMMMQ 382
AIA V + I+ P + + R+ +Q
Sbjct: 251 GAIAGGVQS---IVCCPMELAKTRVQVQ 275
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 41 SLCFVYPLDFARTRLAAD--VGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 190
S YP+D ++ AD G Q +++G +C+ KI+ S G+ +G
Sbjct: 371 SWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQG 422
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +2
Query: 119 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAADP 274
++SG+G ++KI++ +GL G ++G G ++ I+ Y A F Y+ + P
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKKGIAP 641
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +2
Query: 56 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASY 235
YPLD R R+ + +G+G ++S + I +S+G IGL++G ++ +
Sbjct: 700 YPLDVVRRRMQME--RGEGMFKYSSTWDGFKVIVRSEGFIGLFKGMWPNLLKVAPTIGIQ 757
Query: 236 FGFYDTARHA 265
F Y+ ++ A
Sbjct: 758 FAVYEVSKSA 767
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Frame = +2
Query: 122 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAA------DPKNT 283
+ G+ +C + +FK +G+ YR + + I ++ +F Y+ AR A DPK
Sbjct: 32 YRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKTH 91
Query: 284 PI--VISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILY 412
I + A+A +TT + +T R ++ G K + Y
Sbjct: 92 VIAGATAGAVASAITTPLDVAKTLLNTQERSVVNLVGTPKGHVYY 136
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 YPLDFARTRLAADVGKGDGQRE-FSGLGNCISKIFKSDGLIGLYRGFGVSVQGII-IYRA 229
+PLD + RL G++ F+G +C K +++G GLY+G + G+ I+
Sbjct: 45 HPLDTIKVRLQTMPRPKPGEKPMFTGTFDCAMKTIRNEGFFGLYKGMAAPITGVTPIFAI 104
Query: 230 SYFGF 244
++GF
Sbjct: 105 CFWGF 109
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 38 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 214
T VYP+D +TR+ + ++ + +C K+ +++G IGLYRG + G+
Sbjct: 926 TGATAVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGV 984
Score = 31.1 bits (67), Expect = 0.83
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Frame = +2
Query: 143 ISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAADPKNTPIVISWAIAQ--- 313
I K + L R + +SV G FG+Y D T ++ +A+
Sbjct: 859 IMKTLRGHLLTPYVRAYLLSVAGGEAKHLVSFGYYRAFNSMLDNIRTLHGMTMKVAKGNR 918
Query: 314 --TVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCW 433
+ G + YP D V+ RM Q +++ +YKN+I C+
Sbjct: 919 YKEIKKATGATAVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCF 961
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/110 (20%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Frame = +2
Query: 44 LCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIY 223
+C +P ++ +T+L D + + + G +C+ K K G++GLYRG + G +
Sbjct: 55 ICCTFPTEYVKTQLQLD--EKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPK 112
Query: 224 RASYFGFYDTARHAADPKNTPIVISWAIAQTV---TTVAGIISYPFDTVR 364
+ F ++ ++ +N + +A + + A ++ P +T++
Sbjct: 113 ASVRFAVFEYLKNKMADENGKLTQFQTLASGLGAGVSEAVVVVCPMETIK 162
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 275 KNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATI 442
+ P+ V+ +YP D VRRRM M+ RA D YK+T+H +++I
Sbjct: 157 RELPVNFKLMCGSLAGAVSQTATYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSI 210
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 38 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 190
T+ V PLD +TRL + + G+ ++G+ +C KI+ ++GL Y+G
Sbjct: 218 TASVAVNPLDVIKTRLQL-LNRPQGEPNYNGIIDCAKKIYSNEGLAAFYKG 267
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 37.5 bits (83), Expect = 0.010
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Frame = +2
Query: 53 VYPLDFARTRLAADV-GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRA 229
+ P+D + +L K + + G +C+ K+++S GL G ++G V+ I A
Sbjct: 51 IAPVDLVKIKLQMQTEAKRSTRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGFA 110
Query: 230 SYFGFYD-TARHAADPKNTPIVISWAIAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSD 403
YFG Y+ ++ + V ++ +A V S +PFD ++ R+ K
Sbjct: 111 VYFGVYELLCDWFSNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGK-- 168
Query: 404 ILYKNTIHC 430
YK + C
Sbjct: 169 FRYKGMMDC 177
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 38 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSV 205
TSLC YP + ARTRL + G++++ + + + +G GLY G G V
Sbjct: 946 TSLC--YPHEVARTRLRQQESEFLGRQKYRSFFQTLGTVLREEGWRGLYGGLGTHV 999
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 119 EFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY 247
+FSG+ + K++G+ L++G G ++ G+ RA YF Y
Sbjct: 773 KFSGIVPYARYMVKNEGIQSLFKGLGTTLLGVTPSRAIYFAIY 815
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 47 CFVYPLDFARTRLAADVGKGDGQR-EFSGLGNCISKIFKSDGLIGLYRGF 193
C P+D RTR G+ + G +CI K + +G++ LY+GF
Sbjct: 227 CVASPVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYKGF 276
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = +2
Query: 59 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 193
P+D A+TR+ ++ DG+ E+ G + +++I +++G+ L++GF
Sbjct: 113 PVDIAKTRIQ-NMRIIDGKPEYKGTMDVLARIVRNEGVFALWKGF 156
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 74 RTRLAADVGKGDGQR-EFSGLGNCISKIFKSDGLIGLYRGFG 196
R + V K G + + GLG+C+ +++++ GL G+++G G
Sbjct: 183 RVKCLLQVQKESGTKARYQGLGDCLLQVYRTGGLRGVFKGLG 224
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +2
Query: 122 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHA---ADPKNTPIV 292
+ G+ + +FK++G+ +Y+G + + + + G YD + D +N I+
Sbjct: 66 YRGMLGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMYGDTDVQNPKIL 125
Query: 293 ISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKS 400
A + T +A ++ P + V+ R +GR S
Sbjct: 126 KKIAASITTGIMAVSVAQPTEVVKIRFQADAGRYTS 161
>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
Length = 205
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 53 VYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRAS 232
V PLD + R+ D +++ + N K DG+ GL RG+ + G +
Sbjct: 73 VVPLDLVKCRIQVD------PKKYGSMVNGFKITLKEDGVRGLARGWAPTFIGYSMQGLG 126
Query: 233 YFGFYD 250
FGFY+
Sbjct: 127 KFGFYE 132
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 31.5 bits (68), Expect = 0.62
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Frame = +2
Query: 59 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQ----GIIIYR 226
P+D +L G+GD + + G I + F G G Y+G+ S+ I+
Sbjct: 125 PVDIISQKLMIQ-GQGDRKVKLKGARILIRETFHQHGPGGFYKGYFASLMTYAPSSAIWW 183
Query: 227 ASYFGFYD--TARHAADPKNTPIVI-SWAIAQTVTTVAGIISYPFDTVRRRM 373
ASY GFY +AD + +V+ S + VT A ++ P D +R R+
Sbjct: 184 ASY-GFYTGVIGNLSADGTHRLLVLGSSGVLAGVT--AATLTNPLDVIRTRL 232
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +2
Query: 128 GLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAADPKNTPIVISWAI 307
G + I G GL++G+ +VQ + YDT +H K+T + +W +
Sbjct: 176 GTFHAFRNIVDKYGFRGLWKGWLPNVQRAALVNMGDLTTYDTVKHNL-LKHTRLEDNWIV 234
Query: 308 AQTVTTVAGI----ISYPFDTVRRRMM 376
+ +G+ IS P D ++ R+M
Sbjct: 235 HSMSSVCSGLVAATISTPADVIKTRIM 261
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 59 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVS 202
PLD R + + K G + G +C+ +I++ G+ G+Y+G V+
Sbjct: 157 PLD--RVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVYKGISVT 202
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 31.5 bits (68), Expect = 0.62
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 137 NCISKIFKSDGLIGLYRGFGVSVQGIIIY 223
+C I++ +G+ G YRGFG + ++Y
Sbjct: 332 DCFRTIYQQEGIFGFYRGFGALLIQCVVY 360
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +2
Query: 203 VQGIIIYRASYFGFY-DTARHAADPKNTPIVISWAIAQTVTT-----VAGIISYPFDTVR 364
+Q +++ + + G Y DT DP T + + V V +I YPF+TV
Sbjct: 240 IQHLVLIKMGHTGLYGDTRDCNEDPPPTSDMTQSYYPELVANFMAFVVPDLILYPFETVL 299
Query: 365 RRMMMQSGRAKSDIL 409
R+ +Q R D L
Sbjct: 300 HRLYIQGTRTIIDDL 314
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 59 PLDFARTRLAADVGKGDGQRE-FSGLGNCISKIFKSDGLIGLYRG 190
PLD + RL A G+ F G +C K + +GL GLY+G
Sbjct: 40 PLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLYKG 84
>SB_36660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -2
Query: 400 ALGTTRLHHHAPTDCVEG--IGDDTGDCGYGLSDGPADYNGCVL-RVGSMP 257
A G R+H+ T + + +D GYG ++ P Y GC++ R+ S+P
Sbjct: 461 ASGLPRMHYRQDTVRQKSLWVTEDALSPGYGKTEKPLGYRGCIIARIRSIP 511
>SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49)
Length = 351
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 101 KGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAADPK 277
+G+ +E +GLG+ + + S G IGL G VQ +I+ + + G D R PK
Sbjct: 104 EGEMPKEATGLGDQVRSVIMSKGAIGL----GDQVQSVIMSKRA-IGLGDQVRSVIMPK 157
>SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71)
Length = 238
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +2
Query: 101 KGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARHAADPK 277
+G+ +E +GLG+ + + S G IGL G VQ +I+ + + G D R PK
Sbjct: 55 EGEMPKEATGLGDQVRSVIMSKGAIGL----GDQVQSVIMSKRA-IGLGDQVRSVIMPK 108
>SB_43597| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 272
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 132 RPENSRWPSPLPTSAARRVRAKSRGYTK 49
RP +SR S P+SA+RR ++SRG +
Sbjct: 221 RPSSSRPSSARPSSASRRASSRSRGLAR 248
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 219 MMIPCTDTPKPLYRPIRPSDLKILLMQ 139
+++PC P LYR +RP L+I + Q
Sbjct: 587 IILPCPSDPCSLYRELRPQALQIQMSQ 613
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Frame = +2
Query: 59 PLDFARTRLAADV--GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRAS 232
P+D ++++ + + ++ + + I ++ G+ G Y+G ++ I
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 233 YFGFYDTARHAADPKNTPIVISWAIAQTVTTVAG-----IISYPFDTVRRRMM 376
+FGFY+ ++ P+ + + + G ++YP D V+ MM
Sbjct: 281 FFGFYEFTKNLLTPEGGTVNDVSPLGLLTSGAMGGFFYWFLTYPTDLVKSSMM 333
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 60 PLTSHVPVLPPMSVREMASVNSPVSET 140
PL H+P PP + +A+ N P+ ET
Sbjct: 224 PLHPHIPPAPPNPSKAIATPNPPMPET 250
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 54 CTPLTSHVPVLPPMSVREMASVNSPVSET 140
CTP+ S P+LP V + V+ SET
Sbjct: 491 CTPVVSSKPILPEPEVTPLPEVSPKSSET 519
>SB_6969| Best HMM Match : Astacin (HMM E-Value=0)
Length = 225
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 128 GLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASY-FGFY 247
G C S + + G+ + GFG QG++++ + GFY
Sbjct: 88 GFSKCWSYVGRIGGMQKISIGFGCFTQGVVVHEIGHALGFY 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,396,381
Number of Sequences: 59808
Number of extensions: 340647
Number of successful extensions: 980
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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