Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0239
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_22885| Best HMM Match : Apc13p (HMM E-Value=5.6)                    28   7.8  

>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 256 GEEFEEDRADGAKVKSVCTFEGNTLK 333
           G+E E+D  DG+K  S CTFEG T++
Sbjct: 25  GDEHEKDLRDGSKRISGCTFEGITMQ 50


>SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +2

Query: 254  PAKSSKRTALTVLR*NPYAHSKATPSSKSRRPPTVLKSLTSGNSA*GDESCDDS*GRDLH 433
            P   S +  LT        + +A+P + S+  P  L +LT GN    D S     G+ L 
Sbjct: 817  PVSPSAQNQLTYSAVVKAKNEEASPEAASKTVPVKLTALTRGNETNKDVSPKTVSGKGLE 876

Query: 434  QSLQGPVKGLYSEVGSRCPP 493
            +S  G  K   S    R PP
Sbjct: 877  ESKDGTGKRDQSRSLPRPPP 896


>SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
 Frame = +2

Query: 50  SIKMEFVGKKYKMTS-SENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSST 226
           S K E    KY+     E F++  +   +G++ +  AN      E+    D+ NLV    
Sbjct: 176 SFKTELERHKYEFAQMKERFND--QNARLGIVEKTVANQKGDIAEIWMRFDQENLVGEVR 233

Query: 227 FKTTEMKFK-PAKSSKRTALTVL-R*NPYAHSKATPSSKSRRPPTVLKSLT 373
            +    KFK   K++K   L+++ R      S+  P+  +RR   +  S+T
Sbjct: 234 MRDKLKKFKVKTKANKECLLSLMKRLEVQDDSQTNPNKLNRRLSQLESSIT 284


>SB_22885| Best HMM Match : Apc13p (HMM E-Value=5.6)
          Length = 381

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 297 EIRMHIRRQHP-QASPE---GPRRS*SHLRQGIRPEEMKAVMTAKDVTCTRVYKVQ 452
           E+   ++ QH  Q+SPE     RRS +  R+ + P       T  DVT + V K Q
Sbjct: 212 ELNDSVQEQHTAQSSPEPDKNGRRSRAKSRESVAPSYSMNFSTEDDVTISEVSKAQ 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,204,949
Number of Sequences: 59808
Number of extensions: 379062
Number of successful extensions: 1115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)