Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0235
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_6113| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  

>SB_16304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1489

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -2

Query: 401 NTDDARTTSGGLIVRTPVESSRTIVPHTRT 312
           +++ A T SGG+  RTPV++    VPHTRT
Sbjct: 297 SSETASTRSGGMTPRTPVKALH--VPHTRT 324


>SB_6113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 360 SNTSRVQPNYRTAYPNSISSDDSKKTNASEIKHLGCMNTPRHACGSF 220
           S +SR   NY +    S+SS  ++ TN S +      NTP H    F
Sbjct: 16  SFSSRQSLNYSSFLDTSMSSTTTRSTNRSALGGKVIENTPNHTVKEF 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,712,888
Number of Sequences: 59808
Number of extensions: 328068
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)