Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0227
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)                   33   0.20 
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        30   1.9  
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)                     29   4.4  

>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
          Length = 379

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 35  GCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYV 208
           G  +   PPP      P    +  H   + +  VG +IG+ GS++T I+  +GAS+ +
Sbjct: 176 GGRKGKGPPP------PQPGPITSHTMTILKGAVGSIIGQKGSYITGIRQMSGASIKI 227


>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 119 LSQNLVGLLIGKHGSFVTQIKAKTGASVYVR 211
           L ++ +G++IGK G+ +  I  +TGA +YV+
Sbjct: 302 LKESQIGMVIGKGGNRINSIGQETGAKIYVK 332


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 128 NLVGLLIGKHGSFVTQIKAKTGASVYVRRH-PESSKQKICAV 250
           N  GL+IGK G  + QI A +GA V + R+ PE++  K   +
Sbjct: 335 NKCGLIIGKGGETIKQIIAVSGAHVELNRNVPENNPTKFFVI 376


>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/66 (21%), Positives = 31/66 (46%)
 Frame = +2

Query: 26  SGKGCSEAASPPPASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVY 205
           SG   +   +PP ++      ++   + +  +   L+G ++GK G  +T+    +GA + 
Sbjct: 248 SGSNLNNPMAPPTSTATSSSIQSSATL-EITVPDELIGAILGKGGKTITEFMQYSGARIQ 306

Query: 206 VRRHPE 223
           V +  E
Sbjct: 307 VSQKGE 312



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 65  ASLNIVPTETDLRIHQFVLSQNLVGLLIGKHGSFVTQIKAKTGASVYVRRHPESS 229
           AS++I       +  + ++  +  G++IGK GS +  I  +TGA + + +    S
Sbjct: 91  ASMSISFDRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKDAES 145


>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 16/108 (14%)
 Frame = +1

Query: 262 SEIEAALDMIXXXXXXXXXXNFSLQEISAEL------YQKLTPLIPEFLQLQLVESVNND 423
           S+I++ALD I            +L   S +       +   +P +P  +Q  L   VN  
Sbjct: 236 SQIKSALDSIHDRFPTVPLTRINLAATSLQAGAATPQFVNTSPAVP-CVQTVLPSMVNVS 294

Query: 424 TILTCLVSAGHFFLQ----------QPLHPTFPR*RASRLWPHVQNPV 537
            ++T ++ A HFF+Q          Q LH T  +     L P V  P+
Sbjct: 295 VVVTSVIDAHHFFIQLHNDLVQRQLQQLHQTMMQCYGQGLGPVVNQPI 342


>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +2

Query: 89   ETDLRIHQFVLSQNLVGLLIGK----HGSFVTQIKAKTGASVYVRRHPESSKQKICAVEE 256
            E +LR+ Q  +    + L + K    +   VTQ+KAKT  +  +++  E   +K+  VE 
Sbjct: 813  ELELRVQQKSVRNTELELEVAKMKIENRQLVTQLKAKTSHNTELQQEVEVLIKKLANVEN 872

Query: 257  HKVK 268
            ++VK
Sbjct: 873  NQVK 876


>SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)
          Length = 260

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +2

Query: 467 SSPCTPRFRADVLHGY-----GRTSRTPCAVVARPVKKELSGCXLKY 592
           S+P +  FR  +L GY     G T R PC   ++PVK    G    Y
Sbjct: 69  SNPSSLAFRLLILSGYIPLNPGPTYRYPCGACSKPVKCNQKGIQRDY 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,635,797
Number of Sequences: 59808
Number of extensions: 404874
Number of successful extensions: 1204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)