Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0214
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 33 0.16
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024) 33 0.27
SB_34819| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 31 0.83
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 31 1.1
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 31 1.1
SB_51184| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2) 29 2.5
SB_48635| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8) 29 3.4
SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 4.4
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 4.4
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35) 29 4.4
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 28 5.9
SB_37581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6) 28 5.9
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_37399| Best HMM Match : Transposase_11 (HMM E-Value=0.0017) 28 7.7
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 184 KDGKESKNQSPKKF-RSFRSAPHQSSTQNFRKRRPWSVPLTRPRPRSKGRSYRDTVSMRV 360
K ++S ++SP++ +S + P + R+RRP S P R RP+ S R T R
Sbjct: 1024 KKERQSHSESPQRVTKSSKERPRKRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDR- 1082
Query: 361 LL*ME*RPVRTRHSSPATPPRSADPA 438
R R S P PR P+
Sbjct: 1083 ---RRSRGSRRSPSPPKREPRRRSPS 1105
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 33.5 bits (73), Expect = 0.16
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = +1
Query: 172 PRDEKDGKESKN-QSPKKFRSFRSAPHQSSTQNFRKRRPWSVPLTRPRP--RSKGRS--- 333
P+ + + S++ +S K++RS RS H+ + R R P S PR RSK RS
Sbjct: 251 PQKSRSPQRSRSPRSSKRYRSSRS--HRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRR 308
Query: 334 YRDTVSMRVLL*ME*RPVRTRHSSPATPPRSADPAP 441
YRD+ S R R R+R SP + RS +P
Sbjct: 309 YRDSSSCRR------RRSRSRSRSPKSRLRSRSRSP 338
>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
Length = 2040
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Frame = +1
Query: 172 PRDEKDGKESKNQSPKKFRSFRSAPHQSSTQNF---RKRRPWSVPLTRPRPR---SKGRS 333
P ++K G E+++++ ++ P +S +QNF ++RR P+TRP P + G
Sbjct: 1084 PPEDKFG-ENESETAACPEVAKTTPSRSGSQNFTLLKRRRSAPAPITRPEPSIDDTSGSI 1142
Query: 334 YRDTVSMRV 360
Y D VS ++
Sbjct: 1143 YPDLVSCKL 1151
>SB_34819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 86 ISKSSCGTKCPADHRCRHYHSLPPITRCCLETKKTAKSPRTNPLRSLDRSGRRPTS 253
+S SS + PA HY + P CC +KK + + N L + GR T+
Sbjct: 131 LSNSSINVELPASLASAHYLWVFPQISCCWRSKKHRRPKQVNQLETGLTQGRTETT 186
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 31.1 bits (67), Expect = 0.83
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +2
Query: 11 ASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRCRHYHSLPPITRCCLETKKT 190
A+ PA+ STA + R+ TS + SKS+ GT P R + PP + T
Sbjct: 10 ATAPAAISTAKTRGSGRRATSETRKDSKSAPGT--PGQRR-KSVAVTPPRLSAPHIQRGT 66
Query: 191 AKSPRTNPLRSLDRSGR 241
A SPR+ P R++D G+
Sbjct: 67 A-SPRSVPPRTMDTQGK 82
>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
Length = 373
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +2
Query: 11 ASVPASTSTAAGARNWRQNTSLSFTISKSSCGTKCPADHRCRHYHSLPPITRCCLETKKT 190
A+ PA+ STA + R+ TS + SKS+ GT P R + PP + T
Sbjct: 10 ATAPAAISTAKTRGSGRRATSETRKDSKSAPGT--PGQRR-KSVAVTPPRLSTPHIQRGT 66
Query: 191 AKSPRTNPLRSLDRSGR 241
A SPR+ P R++D G+
Sbjct: 67 A-SPRSVPPRTMDTQGK 82
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 175 RDEKDGKESKNQSPKKFRSFRSAPHQS-STQNFRKRRPWSVPLTRPRPRSKGRSYRD 342
R + + S+ S FR RS P S S+ N RR WS P PR RS+ +S D
Sbjct: 309 RQKHERIRSRTNSLPAFR--RSHPRNSDSSLNEMHRRRWSAPEKHPRYRSRLKSVWD 363
>SB_51184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 270 QETKALERSPHKTSPQKQRKKLQGHSFDEGAALDGVKTGENSAFKSRDAAPL 425
+E KA+ +PH+ +++R K + + E AA + G N K R P+
Sbjct: 43 EEGKAILEAPHEEIEKERRSKEERNQTSENAAAQQDEQGRNRIHKCRTRRPV 94
>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
Length = 356
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 125 HRCRHYHSLPPITRCCLETKKTAKSPRT-NPLRSLDRSGRRPTSHPR 262
HR + S+ +R + T + P+ NP +S DRS RP PR
Sbjct: 133 HRTIDHSSVHRASRDTVRTGRDGHKPQAPNPTQSRDRSRERPRDQPR 179
>SB_48635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 197 SPRTNPLRSLDRSGRRPTSHPRKTSGNEGPGAFPSQDLAPEAKEEVTGTQFR 352
SP PL+ R+ + P +E P A + A A+EE TQ R
Sbjct: 327 SPPRQPLKRPSRASQEKVEEPAAPGTDEAPAAGEEEAKAEAAEEESGSTQTR 378
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 3.4
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +1
Query: 199 SKNQSPKKFRSFRSAPHQSSTQNFRKRRPWSVPLTRPRPRSKGRSYRDTVSMRVLL*ME* 378
+KN +PK ++ P Q + +NF R P + P+S S T S
Sbjct: 897 TKN-APKSVQTTSKRP-QDNLKNFPSPRKTRTPSSHQSPQSAPPSSPCTPSSSTA----- 949
Query: 379 RPVRTRHSSPATPPRSADPAPRISSMRP--TDTT 474
P+ T SP+ P +P PR S P +DTT
Sbjct: 950 PPLPTNPKSPSEAPSLNNPNPRSSCTTPPSSDTT 983
>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
Length = 922
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 211 SPKKF-RSFRSAPHQSSTQNFRKRRPWSVPLTRPRPRSKGRSYRDTVSMRVLL*ME*RPV 387
SPK + R S++++ K S+P+ PRP S ++ +T S + P
Sbjct: 717 SPKSLSQRSRGREGSSASKSNSKSSLSSIPIRVPRPPSSQKTQANTASQASVDTASPLPR 776
Query: 388 RTRHSSPATPPRSADPAPRISS 453
+ SSP PP + + R S+
Sbjct: 777 SPKRSSPILPPINRPASGRKST 798
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 382 PVRTRHSSPATPPRSADPAPRISSMRP-TDTTRD 480
P + + ++PAT +S +P P ++ + P T T+RD
Sbjct: 938 PNQAKMNNPATDKKSPNPRPHLTRLTPNTQTSRD 971
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 172 PRDEKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRRPWSVPLTRPRPRSKGRSYRDTVS 351
PR ++G++ + + +P Q R+R+ S P P RSKGR ++VS
Sbjct: 216 PRRNREGRQGGGSRDRDSQRRERSPVPERRQE-RRRQDSSSPSVSPPRRSKGRREENSVS 274
>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
Length = 1078
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +2
Query: 173 LETKKTAKSPRTNPLRSLDRSGRRPTSHPRKTSGNEGPGAFPSQDLAPEAKE 328
LETKK T + S + RKTS ++ G PS L P KE
Sbjct: 126 LETKKFLVEQVTAKQAATSNSNASEANIARKTSDSDASGFDPSASLLPAEKE 177
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 442 AGRGPRSGAASRDLNAEFSPVFTPSKAAPSSKLCP 338
A R PR G +NAE+ +TPS P+ + P
Sbjct: 301 AKRQPRMGYQQLGINAEYIHAYTPSTPTPTRPVHP 335
>SB_37581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 122 DHRCRHYHSLPPITRCCLETKKTAKSPRTNPLRSLDRSGRRPTSHPRK 265
D +C + PPIT+ +KT S T RS +S +RP+S R+
Sbjct: 7 DDKCPKAPNTPPITKSHTTERKTTPSTST---RSPTKSTKRPSSTLRR 51
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 446 SQACAQRTRRATIKPSDDEIPRTERFXVKTTXXTIARGXVSPEPT 580
+Q+C Q+ T P +PR ER V T +AR VSP T
Sbjct: 1135 AQSCPQKIIPTTKFPP--YVPRAERQTVTTAVPVVARDPVSPAVT 1177
>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
Length = 502
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +2
Query: 134 RHYHSLPPITRCCLETKKTAKSPRTNPLRSLDRSGRRPTSHPRKTSGNEGPG 289
R HS P + RC E+ K PR + LR PRK G PG
Sbjct: 71 REKHSPPDLDRCIRES---GKGPRRHRLRPHTNEHHPHDCGPRKDRGKCNPG 119
>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1652
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 181 EKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRRP 285
E DG + KN+ K + PH S++ ++R+P
Sbjct: 573 EGDGNDHKNKPSMKTAAVSDQPHMLSSRGTQRRKP 607
>SB_32608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 178 DEKDGKESKNQSPKKFRSFRSAPHQSSTQNFRKRR 282
DE+DG+E+ + S S+ H+S R+RR
Sbjct: 489 DEQDGEETSSASESSDSQSSSSSHESDVDRRRRRR 523
>SB_37399| Best HMM Match : Transposase_11 (HMM E-Value=0.0017)
Length = 340
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 30 QVPRLGHGTGARTPHSALQ*ANRAVVPSVPQIIAVGIITRFHQSQGAASRRKRRQR 197
++P++G G PH A ANRA VP + AV R Q +R +RR R
Sbjct: 238 RMPQIGPGLPLSLPHGAHFLANRAYPDGVPLLTAV----RAQQMPLLNNRGRRRVR 289
>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1612
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 188 TAKSPRTNPLRSLDRSGRRPTSHPRKTSGNEGPGAFPSQDL 310
T P T+ +R G PTS K + +E P P DL
Sbjct: 488 TKNKPSTSDMRRKPLGGTLPTSKQMKLTSSESPDDEPFNDL 528
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,320,209
Number of Sequences: 59808
Number of extensions: 435230
Number of successful extensions: 2100
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2088
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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