Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0200
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  36   0.039
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)                      30   1.9  
SB_46807| Best HMM Match : DUF827 (HMM E-Value=0.28)                   30   1.9  
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    28   5.9  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 99  GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD 239
           G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKD 282


>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
          Length = 1318

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 260 HIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATAIITTPS 418
           H+ID +  YI+     T    +   +  T +F  ++R G  Q +A     TPS
Sbjct: 716 HLIDRINLYIKDDTGRTVPFEEGGSVKATLQFLRVARWGMAQEVARPFAATPS 768


>SB_46807| Best HMM Match : DUF827 (HMM E-Value=0.28)
          Length = 558

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 447 KVSSSVRWILSRNKNLKATLNCCR*FIKEHFKEI-DSSKLXHPIFRXSLQ 593
           K ++S + I   NKNLK  L+C     +   ++I D++K  H +   +L+
Sbjct: 53  KENNSFKGITEENKNLKQMLDCTERNFEAELRQINDAAKADHEVMENALK 102


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 243 PRHLPVCIQLKSICRSSQIRWEISRFHTRCLGKLSS*SCSPVSARGRCLRE*LQQSP 73
           PR+   C++L + C SSQ + ++   H + L +L+       S+R       LQ  P
Sbjct: 320 PRYHIACLKLWTSCYSSQFKQDLLAKHAKLLLRLAEKDSLDTSSRPAFCTASLQHQP 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,619,222
Number of Sequences: 59808
Number of extensions: 313484
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)